RNA id: TCONS_00062366


Basic Information

Item Value
RNA id TCONS_00062366
length 2031
RNA type mRNA
GC content 0.51
exon number 12
gene id XLOC_031842
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 8622228 ~ 8650321 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAAGGACATCAGGACTTGCTGCCATCATCATGGCTACTTACATTTctactgctgctgctgatgtCATTGACAGGAAGCGTGACTGTAGTGCCATGGAAACCCTGTACAGATCTCCATCCggtggacctgctgtctcgagtgcTGCCCCGTAACGGAGAGGCTCAGGCTGGGGTTCGAATGGTGCAGGAGGGAGGTGCTCGTGGAGTCCAGTTCTTCCGTCCCACACAGACACTAACCTTTCCGTCGTCTCAGCTCTTTGTTAACTGCCCTCACTTCCCTGCAGAATTCTCCATTGTGGCCACTGTAAAAATGCCCCACACCAGAGTGAAGAGGAATGAGTACCTGCTCGCTGTGGTGAAGGAGGATGTCAATCAGCTGTTGCTTGGCCTGCGTTTCTCTAAAGAGAAGGTCCATCTCATCTATCAGGGCTCGACGGGAAAAGAGCGTCTCAGCTTTAAAAGAGTCCGTATGGCAGATAACCACTGGCACAGCATGGTGTTAGCCGTCAGCGGTCACCATGCCACCCTCACTCTTGATTGTGGGATCCCACTGGAACTGGTCCATAAACAGCCGTTTCCCTCTGATCTCAGCACTGGAGGCTCCAGGTTTCACATTGGAAGTCGGAGGAAATGGAAAGGCCTGTTTTCTGGTTTGCTGCGCCAGCTCGTCCTGCTGCCTGGATCCGATGCAACGTCTCGTGTTTGCCCTTCGTCCAGACCATCACTAGTTGAGCTTTCAGTCCCTACATTTCTGTCAAACTTGCCAGCGATATCCCACATGAACGACGTCCTGGTTCCTCCATATGAGACGGAGGTTCGGGTGACTCTGGGATCTAAACCAGCATGCACTGCAGCGGAGCAGGGACAGCTCTGGTTTGACACTCTCAAAAGAGGACTCTTCCTGTGTGACGGCACATACTGGCACTCAATGTTGCAAGACAAAGACAGACTGGACTATGTGGATGATCACCAGGACCTGTACACCAGCTCTGAGACGCTGGATATTGAGCTCTTCCAGATCCCCTCTGTGGGTCTGTTTGCCGCTATGGCTCATCGGGCCACCAAACCAGGCTCTGGCATCTACCGCTGGAGCCACGGACACTTCCAGCTCTACCAGAACATCAGCACCTTCAAGGCACAGGCCTGGAAACAGTTCACTATAGGGAAGAAGatgTTTTTGGCGGTGTCGAACTCTATGGGCCCTGCAGACGGAGAGCCGGAGCTGTCTGTGGTCTATAGGTGGAGTAATAAGAGGCTGAAGTTTGTGCCATATCAGACTCTGGAGACACACAGCGCTCGCGACTGGGAGGCCTTTCAGATTAATAATGAAGCTTTTCTGGCTGTGGCTAATCACCGGACAGAGAACGGCAATCACAACATTGAAAGTGTTGTTTATAAGTGGAATCCAGGAACCAAGACGTTTGAGGTGAACCAGACCATCTTGACATCAGGTGCTTATGACTGGGAGTTTTTCACCGTAGGGCCCTATCACTTCCTAGCAGTGGCCAATGCTTTTGACGGCACCTCTACCCAAACCGATTCATCCATCTATATCTGGCTTGGTGGAGCCTTTCAAGTCTTTCAGACTATAAGGACATTCGGAGCTACAGACTGGGAAATGTTTCAGATCGGAAACCGAGTTTTCCTAGCAGTTGCCAATGGTCATATGCTGTGCGAGAAAGGACCGAGCCTCTACACCATCAACTCAACTATATATGAACTTGATATGACAACCAAGATGTTCCTCAAGTTCCAAGACATTGTAACATACAGTGCGGTGGACTGGGAATTCTTTACTGTTGGAGACGAACATTTCTTAGTCGTAGCCAACTCGTATGATGGATCGTCTTACTCTTTGAACAGTGTCATATACAGATGGCAGGGCTATGAGGGTTTTGTCCCTGTTCATCGGTTACCAACCATCGGATGCAGCGACTGGGAGTTCTTCACCTCCGCGGAAGGTTCATATCTGATGTACTCTAGCGCCAAAGCTCCTCTTTCCAAAGTCTTCAAGCTCAGGATCCACTGA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-120215-12 Predicted to be involved in signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 98 and ectodermal dysplasia 14. Orthologous to human TSPEAR (thrombospondin type laminin G domain and EAR repeats).

Ensembl:

ensembl_id ENSDART00000110470

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064808 lncRNA upstream 168586 8450311 ~ 8453642 (+) True XLOC_031840
TCONS_00062364 lncRNA upstream 275287 8339271 ~ 8346941 (+) True XLOC_031839
TCONS_00064807 lncRNA upstream 350825 8264764 ~ 8271403 (+) True XLOC_031837
TCONS_00062354 lncRNA upstream 528429 8090423 ~ 8093799 (+) False XLOC_031833
TCONS_00062351 lncRNA upstream 969816 7650727 ~ 7652412 (+) True XLOC_031831
TCONS_00062372 lncRNA downstream 54828 8705149 ~ 8871084 (+) False XLOC_031845
TCONS_00064809 lncRNA downstream 58467 8708788 ~ 8741728 (+) False XLOC_031845
TCONS_00064810 lncRNA downstream 60021 8710342 ~ 8997996 (+) False XLOC_031845
TCONS_00064601 lncRNA downstream 259385 8909706 ~ 8997994 (+) True XLOC_031845
TCONS_00062375 lncRNA downstream 465889 9116210 ~ 9122999 (+) True XLOC_031847
TCONS_00062365 mRNA upstream 12833 8598428 ~ 8609395 (+) True XLOC_031841
TCONS_00062363 mRNA upstream 291651 8315050 ~ 8330577 (+) True XLOC_031838
TCONS_00062360 mRNA upstream 293775 8314451 ~ 8328453 (+) False XLOC_031838
TCONS_00062361 mRNA upstream 298478 8314516 ~ 8323750 (+) False XLOC_031838
TCONS_00062358 mRNA upstream 442186 8172227 ~ 8180042 (+) False XLOC_031836
TCONS_00062370 mRNA downstream 1989 8652310 ~ 8684070 (+) True XLOC_031843
TCONS_00062374 mRNA downstream 456742 9107063 ~ 9130843 (+) False XLOC_031847
TCONS_00062376 mRNA downstream 480668 9130989 ~ 9139986 (+) True XLOC_031848
TCONS_00062377 mRNA downstream 492410 9142731 ~ 9150376 (+) False XLOC_031849
TCONS_00062379 mRNA downstream 504950 9155271 ~ 9161393 (+) True XLOC_031850
TCONS_00062362 other upstream 300259 8314523 ~ 8321969 (+) False XLOC_031838
TCONS_00062355 other upstream 528429 8090577 ~ 8093799 (+) True XLOC_031833
TCONS_00062345 other upstream 1117212 7500128 ~ 7505016 (+) False XLOC_031829
TCONS_00062343 other upstream 1149731 7466273 ~ 7472497 (+) False XLOC_031829
TCONS_00062341 other upstream 1168397 7453355 ~ 7453831 (+) True XLOC_031828
TCONS_00062371 other downstream 41087 8691408 ~ 8691993 (+) True XLOC_031844
TCONS_00062373 other downstream 121155 8771476 ~ 8771596 (+) True XLOC_031846
TCONS_00062400 other downstream 1227392 9877713 ~ 9878219 (+) False XLOC_031862
TCONS_00062404 other downstream 1250803 9901124 ~ 9908762 (+) False XLOC_031864
TCONS_00062432 other downstream 2216703 10867024 ~ 10867141 (+) True XLOC_031883

Expression Profile

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