Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00006224 |
| length | 773 |
| lncRNA type | retained_intron |
| GC content | 0.46 |
| exon number | 3 |
| gene id | XLOC_003154 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 2710530 ~ 2760373 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0038066 | p38MAPK cascade | biological_process |
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0035556 | intracellular signal transduction | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0010468 | regulation of gene expression | biological_process |
| GO:0045663 | positive regulation of myoblast differentiation | biological_process |
| GO:0016310 | phosphorylation | biological_process |
| GO:0034644 | cellular response to UV | biological_process |
| GO:0010831 | positive regulation of myotube differentiation | biological_process |
| GO:1901741 | positive regulation of myoblast fusion | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0004672 | protein kinase activity | molecular_function |
| GO:0004674 | protein serine/threonine kinase activity | molecular_function |
| GO:0016301 | kinase activity | molecular_function |
| GO:0004707 | MAP kinase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-021007-1 | Predicted to enable MAP kinase activity. Predicted to be involved in several processes, including p38MAPK cascade; positive regulation of cell differentiation; and positive regulation of myoblast fusion. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus. Orthologous to human MAPK14 (mitogen-activated protein kinase 14). |
| ensembl_id | ENSDART00000160862 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00006213 | lncRNA | upstream | 94534 | 2615070 ~ 2616023 (+) | True | XLOC_003149 |
| TCONS_00008515 | lncRNA | upstream | 390202 | 2308209 ~ 2320355 (+) | False | XLOC_003140 |
| TCONS_00008514 | lncRNA | upstream | 390202 | 2308209 ~ 2320355 (+) | False | XLOC_003140 |
| TCONS_00008380 | lncRNA | upstream | 395771 | 2308218 ~ 2314786 (+) | True | XLOC_003140 |
| TCONS_00008513 | lncRNA | upstream | 397412 | 2308209 ~ 2313145 (+) | False | XLOC_003140 |
| TCONS_00006228 | lncRNA | downstream | 97115 | 2827553 ~ 2828675 (+) | True | XLOC_003156 |
| TCONS_00008381 | lncRNA | downstream | 199741 | 2930179 ~ 2930574 (+) | True | XLOC_003157 |
| TCONS_00008516 | lncRNA | downstream | 473049 | 3203487 ~ 3206698 (+) | True | XLOC_003160 |
| TCONS_00008517 | lncRNA | downstream | 600675 | 3331113 ~ 3333714 (+) | True | XLOC_003164 |
| TCONS_00006252 | lncRNA | downstream | 855591 | 3586029 ~ 3590937 (+) | True | XLOC_003168 |
| TCONS_00006221 | mRNA | upstream | 3529 | 2699951 ~ 2707028 (+) | True | XLOC_003153 |
| TCONS_00006219 | mRNA | upstream | 19624 | 2685112 ~ 2690933 (+) | False | XLOC_003152 |
| TCONS_00006220 | mRNA | upstream | 22103 | 2687395 ~ 2688454 (+) | True | XLOC_003152 |
| TCONS_00006217 | mRNA | upstream | 25962 | 2649664 ~ 2684595 (+) | False | XLOC_003151 |
| TCONS_00006218 | mRNA | upstream | 26578 | 2649891 ~ 2683979 (+) | True | XLOC_003151 |
| TCONS_00006227 | mRNA | downstream | 32730 | 2763168 ~ 2826562 (+) | True | XLOC_003155 |
| TCONS_00006229 | mRNA | downstream | 124992 | 2855430 ~ 2974067 (+) | False | XLOC_003157 |
| TCONS_00006230 | mRNA | downstream | 172154 | 2902592 ~ 2934138 (+) | False | XLOC_003157 |
| TCONS_00006231 | mRNA | downstream | 275098 | 3005536 ~ 3195784 (+) | False | XLOC_003158 |
| TCONS_00006232 | mRNA | downstream | 275686 | 3006124 ~ 3195882 (+) | True | XLOC_003158 |
| TCONS_00006215 | other | upstream | 61163 | 2633791 ~ 2649394 (+) | False | XLOC_003150 |
| TCONS_00006199 | other | upstream | 519827 | 2190621 ~ 2190730 (+) | True | XLOC_003138 |
| TCONS_00006172 | other | upstream | 1164326 | 1546117 ~ 1546231 (+) | True | XLOC_003126 |
| TCONS_00006169 | other | upstream | 1181230 | 1522179 ~ 1529327 (+) | False | XLOC_003124 |
| TCONS_00006161 | other | upstream | 1979634 | 730807 ~ 730923 (+) | True | XLOC_003118 |
| TCONS_00006226 | other | downstream | 14626 | 2745064 ~ 2747797 (+) | True | XLOC_003154 |
| TCONS_00006233 | other | downstream | 446248 | 3176686 ~ 3176770 (+) | True | XLOC_003159 |
| TCONS_00006246 | other | downstream | 768752 | 3499190 ~ 3514108 (+) | False | XLOC_003165 |
| TCONS_00006254 | other | downstream | 1235289 | 3965727 ~ 3968309 (+) | True | XLOC_003171 |
| TCONS_00006260 | other | downstream | 2751315 | 5481753 ~ 5481884 (+) | True | XLOC_003176 |
