RNA id: TCONS_00006231


Basic Information

Item Value
RNA id TCONS_00006231
length 2103
RNA type mRNA
GC content 0.51
exon number 22
gene id XLOC_003158
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 3005536 ~ 3195882 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACATTTATGACGACAATTGTGGGGTCGCCACCGAGGAATAAACTGTCAACTAATCCAGCATTTACTAGAGCTGTGATTCGCCGCTGATGTGCTCGCAGTGTCGGGCGCTGGAGAGAGCAGTACGCATGGGCGTGTTGTTGGAGACAGTAGGGCAGGGCTGGAGCGCACATGTACAGCTTCATACGCACAGATCATCCTTCTTCGCTTCTCCTCCTGCGCACTTTCCGGCGACTTTCAAGTTTCTTGAGTTGTAGCGGGGGGTCTTCATTAATACCCTGGCCTTGCTAACTCCCGGGTGGTCCGAGAGGGACCGTGAGAGCCTCCGCGGGGCCAGGCTGCGCGAGCCGTGGAGCTGCCCCGAGCCGCCGCGCGCGCTCATGGAGGGAGACATCATGGACAAACTCGAAGACATGGCTTCGGTCTACGAGTTCGACCCGTTAACGGGGAACATCCCCGCCACCAAAGTGGAGATCACAGTTTCATGCAGGAATCTCTTAGACAGAGACACGTTCTCCAAATCTGATCCACTGTGTGTCTTGTACACTCAGGGCGTGGAGACCAAGCAGTGGAGAGAGTTTGGAAGAACGGAGGTGATTGACAACACACTAAATCCGGACTTTGTCAGGAAGTACATCCTGGACTACTTCTTTGAGGAGAAGCAGAACCTGCGCTTTGATTTATACGATGTTGACTCTAAAAGTCCCGATCTTTCCAAACATAAGCCCCTTGAACTATACGACTTTCTTGGCCAGATGTTCTGCACGCTGGGAGAAATTGTGGGGTCGCCGGCCAGCCGACTAGAGAAACCTCTCGGGGGCATATCAGGAAAAAACTGCGGCACGATCGTCCTGTCAGCTGAAGAACTGGGCAACTGCAGGGACAGTGCAACCATGCAGTTCTGTGCCAACAAACTGGACAAGAAGGATTTTTTCGGGAAATCTGATCCCTTCATGGTCTTCTACAGAAGCAATGAAGATGGCACGTTTACCATCTGCCATAAAACAGAAGTGGTGAAGAACACACTCAACCCTGTTTGGCAGCCGTTCACCATTCCAGTCAGAGCGCTCTGCAATGGAGACTACGACAGAACGATCAAAGTGGAAGTTTATGACTGGGATCGTGACGGCAGCCACGATTTCATCGGAGAATTCACCACAAGCTACAGAGAGCTAGCCCGAGGTCAGAGCCAGTTCAACGTATATGAGGTGGTGAATCCcaagaagaagatgaagaagaagaaatatGTAAATTCGGGCACGGTGACGCTGCTGTCGTTCTCAGTGGAATCAGAGTCGACTTTCCTTGATTATATTAAAGGAGGGACCCAGATCAATTTCACTGTGGCCATCGATTTCACCGCATCTAACGGTAACCCATCCCAGTCTACGTCTCTCCATTACATGAACCCCTACCAAATGAACGCGTACGCCCTGGCACTGAAGGCGGTGGGGGAAATCATCCAGGACTACGACAGTGACAAGATGTTCCCTGCGTTGGGTTTTGGTGCCAAGCTGCCCCCCGATGGACGGGTGTCTCATGAGTTTCCCCTAAATGGAAATATTGAGAATCCCTACTGTAATGGTATCGAGGGGATACTTGAGGCGTATCATCAGAGTCTGAAAACTGTCCAGCTATACGGCCCGACTAACTTTGCCCCTGTTGTAAATCACGTGGCCAGGTACGCAGCTGCTGTACAGGACGGCTCGCAGTATTTCATTCTCCTCATCATCACAGACGGGGTCATCTCAGATATGTCGCAGACCAAAGAGGCCATTGTTAATGCTGCCAAGCTTCCCATGTCCATCATTATTGTCGGAGTTGGACAGGCTGAATTTGATGCTATGGTTGAGTTGGATGGCGACGACATCAGGATCTCCTCAAGAGGAAAATTAGCAGAGCGAGACATTGTCCAGTTTGTGCCGTTCCGGGATTACATGGACCGGACGGGGAACCACGTGTTGAGTATGGCGCGACTGGCCAAAGACGTTCTGGCTGAAATTCCTGACCAGTTCATTTCCTACATGAAGAGCCGAGGAATCAAACCCAATCCGGCACCGCCTCCATACACACCTCCaggacacacacaccacacacagatcTGA

Function

GO:

id name namespace
GO:0071277 cellular response to calcium ion biological_process
GO:0005886 plasma membrane cellular_component
GO:0005544 calcium-dependent phospholipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1398 Predicted to enable calcium-dependent phospholipid binding activity. Predicted to be involved in cellular response to calcium ion. Predicted to be active in plasma membrane. Orthologous to human CPNE5 (copine 5).

Ensembl:

ensembl_id ENSDART00000174539

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008381 lncRNA upstream 74962 2930179 ~ 2930574 (+) True XLOC_003157
TCONS_00006228 lncRNA upstream 176861 2827553 ~ 2828675 (+) True XLOC_003156
TCONS_00006224 lncRNA upstream 275098 2710557 ~ 2730438 (+) False XLOC_003154
TCONS_00006213 lncRNA upstream 389513 2615070 ~ 2616023 (+) True XLOC_003149
TCONS_00008514 lncRNA upstream 685181 2308209 ~ 2320355 (+) False XLOC_003140
TCONS_00008516 lncRNA downstream 7703 3203487 ~ 3206698 (+) True XLOC_003160
TCONS_00008517 lncRNA downstream 135329 3331113 ~ 3333714 (+) True XLOC_003164
TCONS_00006252 lncRNA downstream 390245 3586029 ~ 3590937 (+) True XLOC_003168
TCONS_00008518 lncRNA downstream 419966 3615750 ~ 3735803 (+) True XLOC_003169
TCONS_00008519 lncRNA downstream 575482 3771266 ~ 3783125 (+) True XLOC_003170
TCONS_00006229 mRNA upstream 31469 2855430 ~ 2974067 (+) False XLOC_003157
TCONS_00006230 mRNA upstream 71398 2902592 ~ 2934138 (+) False XLOC_003157
TCONS_00006227 mRNA upstream 178974 2763168 ~ 2826562 (+) True XLOC_003155
TCONS_00006223 mRNA upstream 245163 2710547 ~ 2760373 (+) False XLOC_003154
TCONS_00006225 mRNA upstream 247477 2710569 ~ 2758059 (+) False XLOC_003154
TCONS_00006235 mRNA downstream 16042 3211826 ~ 3249117 (+) False XLOC_003161
TCONS_00006234 mRNA downstream 16042 3211826 ~ 3249117 (+) False XLOC_003161
TCONS_00006236 mRNA downstream 16042 3211826 ~ 3258701 (+) False XLOC_003161
TCONS_00006237 mRNA downstream 16043 3211827 ~ 3249458 (+) False XLOC_003161
TCONS_00006238 mRNA downstream 50275 3246059 ~ 3249458 (+) False XLOC_003161
TCONS_00006226 other upstream 257739 2745064 ~ 2747797 (+) True XLOC_003154
TCONS_00006215 other upstream 356142 2633791 ~ 2649394 (+) False XLOC_003150
TCONS_00006199 other upstream 814806 2190621 ~ 2190730 (+) True XLOC_003138
TCONS_00006172 other upstream 1459305 1546117 ~ 1546231 (+) True XLOC_003126
TCONS_00006169 other upstream 1476209 1522179 ~ 1529327 (+) False XLOC_003124
TCONS_00006246 other downstream 303406 3499190 ~ 3514108 (+) False XLOC_003165
TCONS_00006254 other downstream 769943 3965727 ~ 3968309 (+) True XLOC_003171
TCONS_00006260 other downstream 2285969 5481753 ~ 5481884 (+) True XLOC_003176
TCONS_00006262 other downstream 2335659 5531443 ~ 5531576 (+) True XLOC_003178
TCONS_00006273 other downstream 2684791 5880575 ~ 5923741 (+) False XLOC_003185

Expression Profile

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