RNA id: TCONS_00064612


Basic Information

Item Value
RNA id TCONS_00064612
length 763
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id XLOC_031963
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 17532018 ~ 17533025 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTATTCAGGCGAAAGTGTCTTGTCGTAATGTTGGCACAGAAACTATTTCTTTGCCAGATATGCAGCTCTCTTCAACACCAATTAAGGGTTCAATCTTTAGGCCAAGCAAGCGACCTCGTCTTTTGTTGGAGGAGGAGGATGACAACAATGATGATGAGGACGAAGAGTCTGATTTGCATGTAGAACCACATGACTCCACTTATAATCCGGAATCTGTTGTCACGGAAGATTCACAGTCAGTGTTAGATCCAGAATCAAACTACATGGACAACAAATACATTGTATTTGAAAGCTGCCTTATAGACTTGTTTGGTTCCTGTCCCGTCTGTAAGACAAAGTGTGCCATCCAAAAAAGACAAATGGGGACTTTTATTGCATTCACACAGCTGTGTGACAAGTGTAACTACCTACGACAGTGGCAGAGCCAGCCCATAGTAGGTAGTACTCCAGTCGGAAACCTGATGTTGTCTGCTGCTACATATTTCACTGGTGGATCATTCATTCAACTACAGAGGGTTTTCAAGGCCATGAATCTTCAAACGATTCAGTACTCTGCTTTCAGGAACCATGCCAGAAATTTTTTAGAACCTGCCATCATACACAAGTGGAATCTAgagcaacaaaatatttttacacagctAAAAAAAGAGGGAGCGGTTGCATTAGCAGGAGATATGAGAGCTGACACACCAGGTATGGTGGGTTTATTTAAATCACTTTGAAATCtgataaatgtatgtgtgttaatgtataattctttttt

Function

GO:

id name namespace
GO:0019222 regulation of metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064828 lncRNA upstream 257601 17058192 ~ 17274417 (+) True XLOC_031955
TCONS_00064827 lncRNA upstream 722792 16799202 ~ 16809226 (+) False XLOC_031948
TCONS_00064825 lncRNA upstream 857334 16591985 ~ 16674684 (+) True XLOC_031945
TCONS_00064826 lncRNA upstream 862872 16667458 ~ 16669146 (+) True XLOC_031946
TCONS_00062529 lncRNA upstream 1134493 16394629 ~ 16397525 (+) True XLOC_031941
TCONS_00062549 lncRNA downstream 79019 17612044 ~ 17613202 (+) True XLOC_031964
TCONS_00064613 lncRNA downstream 173984 17707009 ~ 17707782 (+) True XLOC_031965
TCONS_00062553 lncRNA downstream 635934 18168959 ~ 18177200 (+) True XLOC_031967
TCONS_00062556 lncRNA downstream 740572 18273597 ~ 18274390 (+) True XLOC_031968
TCONS_00064829 lncRNA downstream 907471 18440496 ~ 18442975 (+) False XLOC_031973
TCONS_00062546 mRNA upstream 263021 17267681 ~ 17268997 (+) True XLOC_031960
TCONS_00062545 mRNA upstream 322753 17208022 ~ 17209265 (+) True XLOC_031959
TCONS_00062543 mRNA upstream 349545 17181157 ~ 17182473 (+) True XLOC_031957
TCONS_00062542 mRNA upstream 417025 17113677 ~ 17114993 (+) True XLOC_031956
TCONS_00062541 mRNA upstream 477052 17053650 ~ 17054966 (+) True XLOC_031954
TCONS_00062550 mRNA downstream 256456 17789481 ~ 17790513 (+) True XLOC_031966
TCONS_00062551 mRNA downstream 609598 18142623 ~ 18177170 (+) False XLOC_031967
TCONS_00062552 mRNA downstream 609692 18142717 ~ 18181589 (+) False XLOC_031967
TCONS_00062554 mRNA downstream 718115 18251140 ~ 18292410 (+) False XLOC_031968
TCONS_00062557 mRNA downstream 765419 18298444 ~ 18347478 (+) False XLOC_031970
TCONS_00062548 other upstream 150436 17381485 ~ 17381582 (+) True XLOC_031962
TCONS_00062547 other upstream 214365 17317557 ~ 17317653 (+) True XLOC_031961
TCONS_00062544 other upstream 326729 17205192 ~ 17205289 (+) True XLOC_031958
TCONS_00062540 other upstream 480883 17051039 ~ 17051135 (+) True XLOC_031953
TCONS_00062521 other upstream 1987848 15544055 ~ 15544170 (+) True XLOC_031935
TCONS_00062555 other downstream 721375 18254400 ~ 18261416 (+) True XLOC_031969
TCONS_00062570 other downstream 1009616 18542641 ~ 18543403 (+) True XLOC_031975
TCONS_00062573 other downstream 1020642 18553667 ~ 18562835 (+) True XLOC_031976
TCONS_00062576 other downstream 1513962 19046987 ~ 19049980 (+) True XLOC_031981
TCONS_00062579 other downstream 2257175 19790200 ~ 19802529 (+) True XLOC_031983

Expression Profile

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