RNA id: TCONS_00062557


Basic Information

Item Value
RNA id TCONS_00062557
length 4099
RNA type mRNA
GC content 0.42
exon number 20
gene id XLOC_031970
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 18298444 ~ 18350267 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTGTTGTCGGGAAAAATCTATTCTTGTCTTTCAGGTTTCTTCACGTACCTGTGAGTGTGAGGGGGAGGAGATTTGACATAACTTCCTTCTAATGTCACTCTTTTTCATTTCACTCTGCTGTGTTTATGCCTACATTAGAGAAGTTTTTTATTTCTACTATCTagttttttgataaatttttttttttcatttgtaaaatccTTTTTTGTATATGTGATAAAAAGTCGGATTTAGGGATTTCAGAATGGCGGAAAGTGTCCTGGACACTCCAGACCTGAAGGATCTACAGGAAGAAGAACTGTGGGGTCTTATCAATGATAACCGTCATGCCATTTGTCTTGGTATCCGTCCCTGTGTTCTCATACCTTACCTTCGGCAGGCACGTGTCCTTACTGACCTGGATGAGGATGAGATTCTCAACTGTCTCACATTGATCAACCGCTCCATGAGGACCAgtCATATGCTTGACTTGTTACGTATACAGGGTCGTAATGGTGCTATGGCTCTGCTTGAAAGTCTGATGATTCATTACCCCACTCTCTACACACAGATCACAGGCCGCCAGCCCAGCATTGAGCCTTCACGCTTCAGCGGCCTGATAAAGTACACCGAGTTGACAGAGTACCTGGTTCATGCTGTGAGCAGTATGCAGAAAGAGCTACAAGTGACACAACATGAGTCTTCACGGCTGAGAGCTCAGTGCTGTGAACTGGAGGGAAAACTGGGACAGGCTGAACAAAATAATCAAGAGTTCTTTCAGATACAGAGAGAGCATGCACGACTGCACAATCACCTTGATGGTTTAAACAGGGAACTGTTGAAACTAAAAGATGAGAAATGTGATCTCTATGTAAGGTATACTACAGCTCTTGAGGAGAAGTCTGCAAATGTTATACGCAACAGAGACCTGCAACTTGAGATTTACCAGCTGCAATGCGACTTAAGGAAGGCACAGAAGCAGACAGAATTCCAGAGGCAGCATTCTGTGAAAAATTTAAGTGACACACAGAAGCTGAAAGATGAGCTCAGTGCTGTACGTGCAAAGTTACTGGAAACTGAGACATTCTCCCCGGTAAAGCAGGATATCCTAGCCCATGATTTAAAAGAGATAGAGACCAGACGTTCAGAACTTGCTGAAGAGGTCAACAGAATTAATGAGGAAAAAGAACAACTCCAGCAAGAGAAAGAAGAACTCTTAGAAGAGAAGAACTCTTTGGCTTTGGAGGTGGCAAAGTTGACCGTGGACTGTGAGATGTACAAGCACAGGAGCATGCTGTTTCAGAGTCAGCTTGAAGATGTGCAGGCAGAGAGAGACAAGGCATATCTGTCCCGTGATGAAGCCCAGGCTCAGATTGCACGTAGTCTTGCAGAAAAAGACACTTTGAGGAGCCAGCTCATGGAACTACAGGAGAAACTTTTCACCATGAATGCTTGTAGCACGCAAAGAGAAAGAAGAGAAAAATCGAGGGACAGGAAGTTCAGCTGTGAGAGCAGCCCTCCTTCCAGCCCAACACTAAGAAGACAGCGATGTGATTTAAAAACCATCCATCCTAAGTGCTTCATTTCATATGATGCTTCTGAGTTCAGTGATGAACACATCAGCAGTATCATTTCGAATCAAGTGGAGCCACCCTGCTCTGAGTCTCTCCGCAGACGAGATTTACACTTTTCATCCAGAAGTGACACAGAGGATAATTTCAGCATTCAGGATCTGGCTGATGACTGCTTTACAGACGATGATTATGTCGTCATCGCAAAAGGACATTGCTTGGAGGAGTCAGTTTCATCATCATCAATTTCCAGTCCTATGAGTAAAAGGAGCCATCCTGACAgTGTCTCGAGAGTATCAGCTCCACCCTTCCTAATGCGTTCCAGACCTCAGGCCCTGCGCATCACTGGTCGCATACTCACCATATTTTTCCAAGGGGAAACCCTATTGAACCAAATACAGATCATTGGTGGCAATAAGACTGGTGTGTTTGTGCATCACGTGACTAAAGAATCTTCTGCTCATAACTCTGGCATCAGCCCAGGCACTCAGATACTTCAGctgaaatatgAGCGGAAACGGAGAGCTGTACAAATGGTTCTGGAAGACACCACTATGGAGGAGGCCCTTTGGGCCCTAGGCCAAGTCCAAGGGCCATGCCACATTACACTGAGACCCAACCAAGATGCCTATGAGAACCTGCTACAACAACTAAAGAACGATGAAGTGATGTCGGGTGATTCGTTCTATGTACGTGTTAACATGACATTGCCGGGGGATGTAGCAGGAAATCTGTCTGTTAAGTGTAATGACATTATCCATATTACAAACACTTACCATACCAATGATGGCTTCTGGTGGGGCAGTCATGTGCATCCTTGTCACCTGGAAGATCTTAAGAGTGGGGCTCTGCCCAACTACTACAGAGCACAGAGGCTATTAATCAGGGCCATAGAGGATATGACCTACTCTCGCAAAACGCACAGAAAGGGGAGAACTGCAGCTGATGAAAAACAGAGAGTGGTGAGGATTGTCAGCACAAGTCAGCAGAGAAGAAACCCACTGTGGGTCAGTGTGGAAGATGACAACAGCAAAAGCCAGGACAATGATGGCTGTTTGCCGAGCAGATGTCTGACCCTGATGCCCTTCACACTGGTCACACCCCGATTCCCTCCCATCTGCCGCCCAGTCCTCCTCCTTCCCACAATCCTTGGCCGTGTTTTGCACAAGCGCCTGGCAGAACAGGAAGGTTATCAGCTCTGTGAGCCagAACAGCTAATGACTAGTGAGCATGGCATGCAAATGCAGAAGGGGGAGATTCTTGAAGAGTGTGACTCAAAAACACACCTTTGCTATACACTGCAGGGAGTTGAGAAGATCATGAAACGGGGTACTCACTGTGTTTTACCTTTTGGTTTGGACTGTGTGTGTCGTCTCCATCGTGCTGAAATCTTCCCCATCATTGTCTACATCATATCAACAGAGAGAAGTCTCCGCAGATTGAGACACAAACTACGGCAGAACAGCGTTACTGAATCTCAGGTGCTGGAGTGTTCCTGCAGCGAGGAGCCACTTCTAGATAAACTGCCCTGCCTTTACCGAAGTATTCCGCCAGAAAGCTGGCACGACACCGCCACCCTAGTGGACACTCTTAAAACTGTGGTAACAGAGGAACAGAACAAGATTGTGTGGGTTGAGTCAGATCCATGGTGAGGTAACAATAGGAGTTTATGGCAAAAATGGAGGACTGCTACAGagctaaggtttttttttctactttggaaTCAATGggtaccagcatttttcaaaatgtcttattttgtgtttataaacTCCTAAAAGTTTAAAACATGCAGAAGAAATGGTGAGGTAAATTTTGTTTTTGGGGAGGACAACTATAACTACACTATCTTTTAAACGTTTGAGGACAGTACGATACTGTAATGCATATAAATATTTCTTACATATACAGTAATGGCAATTGATGGAAGTTAATAATACTCTAGACTTGTATATTgctacaattttaaataaatgctgctctTTTATTCAGCAAATTCTGTCAAAAATATTCAGTAGAGCGACTTTTTCAATCTTATTAATGATATGAATTTTAATATTGGAGCACCAAATCAACATTTTCAGCttgaaatttaaacaaatttatcaTTCTGCTAGACCAAGCTGTCTTTAATATGTTGTAAAGTATATTGGCTTTTGTTTACTCTCGTGTATTGTTTAACTTATTACAGTCAATTTAAAACTGGAAATGTGTAACTTGTGTAGCTAATGTTCTATTTTAttgttgtatatttttttcctacaAATCCTGTgacatgttttaaatatatttatttaattatgtaaagaTTTTTACAATTGATGTATCCTTCTGCTCATGTAAAAAACAAGTCAAGCAGCAGTATAAAGCTTTTCATTAACTCTATACTTTTCCATGAGAAATGTCATCAACCAATCTATTAATCTCAAGAATGTTAATAAATCCTACAAAAACAGACCAATGAATGGTAGATGGATGGTTAAATTGTATGCATCATTAATGTGCTCCCCAACAGAGTGATGAGGCATGACACCCAGATATTTAGGCA

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0050700 CARD domain binding molecular_function

KEGG:

id description
ko04064 NF-kappa B signaling pathway

ZFIN:

id description
ZDB-GENE-090310-1 Predicted to enable CARD domain binding activity. Predicted to act upstream of or within regulation of apoptotic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm. Is expressed in gill and spleen. Human ortholog(s) of this gene implicated in pityriasis rubra pilaris and psoriasis 2. Orthologous to human CARD14 (caspase recruitment domain family member 14).

Ensembl:

ensembl_id ENSDART00000166018

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062556 lncRNA upstream 24054 18273597 ~ 18274390 (+) True XLOC_031968
TCONS_00062553 lncRNA upstream 121244 18168959 ~ 18177200 (+) True XLOC_031967
TCONS_00064613 lncRNA upstream 590662 17707009 ~ 17707782 (+) True XLOC_031965
TCONS_00062549 lncRNA upstream 685242 17612044 ~ 17613202 (+) True XLOC_031964
TCONS_00064612 lncRNA upstream 765419 17532018 ~ 17533025 (+) True XLOC_031963
TCONS_00064829 lncRNA downstream 93018 18440496 ~ 18442975 (+) False XLOC_031973
TCONS_00064830 lncRNA downstream 173381 18520859 ~ 18523946 (+) False XLOC_031974
TCONS_00062569 lncRNA downstream 192163 18539641 ~ 18541192 (+) False XLOC_031975
TCONS_00064831 lncRNA downstream 365284 18712762 ~ 18728431 (+) True XLOC_031978
TCONS_00064614 lncRNA downstream 531979 18879457 ~ 18880664 (+) True XLOC_031979
TCONS_00062554 mRNA upstream 6034 18251140 ~ 18292410 (+) False XLOC_031968
TCONS_00062552 mRNA upstream 116855 18142717 ~ 18181589 (+) False XLOC_031967
TCONS_00062551 mRNA upstream 121274 18142623 ~ 18177170 (+) False XLOC_031967
TCONS_00062550 mRNA upstream 507931 17789481 ~ 17790513 (+) True XLOC_031966
TCONS_00062546 mRNA upstream 1029447 17267681 ~ 17268997 (+) True XLOC_031960
TCONS_00062561 mRNA downstream 11828 18359306 ~ 18362631 (+) True XLOC_031971
TCONS_00062562 mRNA downstream 19910 18367388 ~ 18381700 (+) True XLOC_031972
TCONS_00062563 mRNA downstream 71173 18418651 ~ 18439583 (+) False XLOC_031973
TCONS_00062564 mRNA downstream 71178 18418656 ~ 18439324 (+) False XLOC_031973
TCONS_00062565 mRNA downstream 75924 18423402 ~ 18440636 (+) False XLOC_031973
TCONS_00062555 other upstream 37028 18254400 ~ 18261416 (+) True XLOC_031969
TCONS_00062548 other upstream 916862 17381485 ~ 17381582 (+) True XLOC_031962
TCONS_00062547 other upstream 980791 17317557 ~ 17317653 (+) True XLOC_031961
TCONS_00062544 other upstream 1093155 17205192 ~ 17205289 (+) True XLOC_031958
TCONS_00062540 other upstream 1247309 17051039 ~ 17051135 (+) True XLOC_031953
TCONS_00062570 other downstream 195163 18542641 ~ 18543403 (+) True XLOC_031975
TCONS_00062573 other downstream 206189 18553667 ~ 18562835 (+) True XLOC_031976
TCONS_00062576 other downstream 699509 19046987 ~ 19049980 (+) True XLOC_031981
TCONS_00062579 other downstream 1442722 19790200 ~ 19802529 (+) True XLOC_031983
TCONS_00062583 other downstream 1785054 20132532 ~ 20132629 (+) True XLOC_031985

Expression Profile

//