RNA id: TCONS_00062564


Basic Information

Item Value
RNA id TCONS_00062564
length 1997
RNA type mRNA
GC content 0.45
exon number 13
gene id XLOC_031973
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 18418651 ~ 18442975 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgtgaggaGGAGGCTGTTCGGTCAAGTGAGCAAGAGTTGTGCTGTGTTTGCAAACGTTTTGGAAACGAATATATTCATTCAGTCGATAAGCAGACGAAGAGGAAGCATAAGCATCCTCTCTCAATTTCTTGGATGTGGGTAAAAATATTGATACAGACGCTGTGAAGGAGGCCTCCCCTGTTGGATTTGACTTGGTAGACAGTAACATCAGAAGTGGAGTGTGAGGAGTGAACAAAATCATGGTCCCTCGTCTGTGAGAGACAGGGACAGGTCAGGCTACCCATCATCATGTCTATTCAAGAGTGTCCAGAGAGCCCAATGCTGGAGGGTGAGGAAGGCAGAGGGGTGGAGAGAGATTCGGACAGAGACAGTGCAGTAGACAGTGCTTCAGAGATATCAGATGGAGGGAGAACTGGAGAAAAAGAGGAAGGGATTGGGATTTGCCTCCCAagagaaaaGGGTGATCTGATGCATAATCATTTTGAGATTTCTGATCAGTCTGCACTTTCATCTGCCTCATTAAATGAAGAGCAGTTTGAGGACTATGGAGAAGGTGAGGATGGAGACTGTACTACAAGTAGCCCCTGTCCAGATGATGAGATCCGCATTAATGGATGCTCAGATCTGGGGTCTTCAGTTTCATCCAGTGCTGGTCAAACTCCTCGAAAGATCCACAATGTGGATGACCAAATGGAGGTGTTTTGCTCTCAGTGTTGTAAAAGGGTCAGTCTGCTCAGTGACCTGGAGAACAGGCTGAAAAATCTCAAAACCAGCAGTCCAAACAGAAAGATCTCCAGTACTGCATTTGGAAGGAAGCTGCTTCACAATAGTAACATCAGCAGTAGTAATGGCAGCACAGAAGATTTGTTTCATGATAGCACTGACTCCAGTGATCTAGACATTACAGAGAAGGTAAGTTACTTGGACAAGAAAGTGACAGAGCTGGAAAATGAGATTCTGATGAGCGGGGATGTAAAAACCAAGCTGAAACAGGAAAATATCCAGTTGGTCCACAGGATCCATGAGCTGGAGGAGCAGCTTAAAGACCAGGAGACCAGAGCAGAGAAAATCATGGAAGATGAGCTTAGGAGACACAGAGATGCCTACATTCGACTGGAGAAAGACAAAAACACTCAGATAGAGCTGCTCAGAAACCGATTACATCAACTAGAGGACGAAAATGGAAAGATGGCAATGAATATGAACAGACTAAAATCTCAGACCGAGAAACTGGATGAgGAGAAGCAGCGGATGACTGATAAGCTGGAGGACACAAGCCTGCGGTTGAAGGATGAGATGGACCTGTACAAGAAGATGATGGACAAGCTACGGCAGAATAGACAGGAATTTCAAAGGGAAAGAGATACCATGCAGGAACTCATCGAGGATCTTCGGCGAGAGCTGGAGCACCTTCAGTTATACAAGCTGGAGGCAGAACGAGCTGGACGTGGTCGCAGATCTTCCATTAGTCTATCTGAATACAGCAGCCGAACACGTGAGAGTGAGTTGGAACAGGAGGTCAGGAGACTCAAACAGGACAACCAGAAACTGAGGGAACAGAATGAAGATCTAAATGGTCAACTTCTCAGTCTGAGTCTCCATGAGGCCAAGAACCTGTTTGccacacaaacaaaagcacaGTCTCTGGCTATGGAGATTGATCATGCATCCCGTGACCAGTTATTGGAAGCCCTCAAGCAACAAGAGGAGATAAACCTCCGTCTCAGGCAATACATGGACAAGATCATTTTGTCAATTTTGGACCACAATCCATCTATTCTGGAAATTAAAAACTAAACGTGTGTTATGAACTGTTTAAAAGCAGCCATGGACTTAGAGCTCCTCCCAAGGAAGGAAATGATCTCCAATGCCTCTGATTGCACAGTAACTACAACGTGATGGTGTTTGTGCACCTTTTCCACATTACACAAATGAAAGAAAATGTATATACAGTGATGAAATATTTCAAGCACTTTTAAGGGGCATTTTTGCTGCTC

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0032456 endocytic recycling biological_process
GO:0032465 regulation of cytokinesis biological_process
GO:0051301 cell division biological_process
GO:0005768 endosome cellular_component
GO:0030139 endocytic vesicle cellular_component
GO:0005813 centrosome cellular_component
GO:0055038 recycling endosome membrane cellular_component
GO:0030496 midbody cellular_component
GO:0032154 cleavage furrow cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0042803 protein homodimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080722-8 Predicted to enable protein homodimerization activity and small GTPase binding activity. Predicted to be involved in endocytic recycling and regulation of cytokinesis. Predicted to act upstream of or within cell division. Predicted to be located in endosome. Predicted to be active in cleavage furrow; cytoplasmic vesicle; and midbody. Predicted to colocalize with centrosome. Orthologous to human RAB11FIP4 (RAB11 family interacting protein 4).

Ensembl:

ensembl_id ENSDART00000167798

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062556 lncRNA upstream 144266 18273597 ~ 18274390 (+) True XLOC_031968
TCONS_00062553 lncRNA upstream 241456 18168959 ~ 18177200 (+) True XLOC_031967
TCONS_00064613 lncRNA upstream 710874 17707009 ~ 17707782 (+) True XLOC_031965
TCONS_00062549 lncRNA upstream 805454 17612044 ~ 17613202 (+) True XLOC_031964
TCONS_00064612 lncRNA upstream 885631 17532018 ~ 17533025 (+) True XLOC_031963
TCONS_00064829 lncRNA downstream 1172 18440496 ~ 18442975 (+) False XLOC_031973
TCONS_00064830 lncRNA downstream 81535 18520859 ~ 18523946 (+) False XLOC_031974
TCONS_00062569 lncRNA downstream 100317 18539641 ~ 18541192 (+) False XLOC_031975
TCONS_00064831 lncRNA downstream 273438 18712762 ~ 18728431 (+) True XLOC_031978
TCONS_00064614 lncRNA downstream 440133 18879457 ~ 18880664 (+) True XLOC_031979
TCONS_00062562 mRNA upstream 36956 18367388 ~ 18381700 (+) True XLOC_031972
TCONS_00062561 mRNA upstream 56025 18359306 ~ 18362631 (+) True XLOC_031971
TCONS_00062559 mRNA upstream 68389 18321627 ~ 18350267 (+) False XLOC_031970
TCONS_00062566 mRNA downstream 2007 18441331 ~ 18442705 (+) True XLOC_031973
TCONS_00062567 mRNA downstream 81535 18520859 ~ 18523946 (+) True XLOC_031974
TCONS_00062568 mRNA downstream 92608 18531932 ~ 18544545 (+) False XLOC_031975
TCONS_00062571 mRNA downstream 105467 18544791 ~ 18554840 (+) False XLOC_031976
TCONS_00062572 mRNA downstream 105582 18544906 ~ 18566524 (+) False XLOC_031976
TCONS_00062555 other upstream 157240 18254400 ~ 18261416 (+) True XLOC_031969
TCONS_00062548 other upstream 1037074 17381485 ~ 17381582 (+) True XLOC_031962
TCONS_00062547 other upstream 1101003 17317557 ~ 17317653 (+) True XLOC_031961
TCONS_00062544 other upstream 1213367 17205192 ~ 17205289 (+) True XLOC_031958
TCONS_00062540 other upstream 1367521 17051039 ~ 17051135 (+) True XLOC_031953
TCONS_00062570 other downstream 103317 18542641 ~ 18543403 (+) True XLOC_031975
TCONS_00062573 other downstream 114343 18553667 ~ 18562835 (+) True XLOC_031976
TCONS_00062576 other downstream 607663 19046987 ~ 19049980 (+) True XLOC_031981
TCONS_00062579 other downstream 1350876 19790200 ~ 19802529 (+) True XLOC_031983
TCONS_00062583 other downstream 1693208 20132532 ~ 20132629 (+) True XLOC_031985

Expression Profile

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