RNA id: TCONS_00008517


Basic Information

Item Value
RNA id TCONS_00008517
length 2602
lncRNA type antisense_over
GC content 0.35
exon number 1
gene id XLOC_003164
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 3331113 ~ 3333714 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTGGCACTTTCTTCTACTTCGTCTGCTGAGGTGAGAATATTGTGCTTTGCAAACACTTTCTGATATCGTATAATGATAAAAATTGTTGTAAGCTCTTCCTACCTATTGTCCTCGAGTGAAAACGCCCTTTCTAGAAATACATCATTATTGGAAATCTTTTGACAGTTTCCTGCGCGCGCGCTTCTTTGGTgtacacattaaaaaacaaaaacattgcttTCATTAAGTTAATTGTTGATGGTAGAACGTTGTAAGCTTAATCTGTAGGCACAAATGCTCCTAACGGATGTTTTTATAGCACACGTACAGCATATGAAATTGTATTGTTTAAGATACAGCTGATATGGACCAAACCAAAATATCGCGTTTTTCTCAGGCACTTTCTTCATCTGCTGAGGTGAGAGCATTCTGTTGTGCTATGTAAACACTTCATGACATCGTACAATAATAATATTCGCTGTTGATGAAGCTCTCTTATCTTTTGTTCTCGAGGGAAAACGccctttctataaatatattattattgggAATCACTATAGTCTCCTGAGGCGCGGTTGTGCGAGGCAGTTTCCCGCGCGCGCTTCTTTGGAGTAAGTTACACAACAAACATGATTTTCAAGGTAAGTGTTGATGGTAGAAGTTTTAAGCAGTAACTATAGGCACGAATGCTGCCTACgaatgtgtttttatgtttttacagcCAACATATGAAATTGTGTTGTTAATTTTCAGTAGGATGAAAGCAGCAGCCTACTTCAGCATGCGTGTGCTGTCCATGGAGCATCGTTGAAATGGCTCCTCATCCATCCATTACAGTGCAGACCGCATAATAGAGGATGATAATGGGAGGGTCTTTGCTGCAGCTTCTTTGTCTGAGTGACTTTCATTTTCTGCCACGCCCAGGTAGGCTAACAAAAACATCTTTatacaaatacttttatttttgcaGATCTAATCTGATAACTTTTCAGTTATCTGTGTGCAGATCCCACCCTAAAGCGGTGCTATTACTTTGTTGTAGAAGATAATCTCcatacaaacacatttaaagtaTATTTCTATTTCCCATTGCTATGCACAATGCCaaccttaattaattaatattattaataagtatGATCATTAAACAAAAGCTTATTCCATCCATAATCTGATAAAACACGGGTATGATTACAACATTATAACCtatttacatgtttatgtttGTGCATACACTTATTAACATCAGTATCTATTTTTATGTGAACTGCTAAAGGGGTCATTTACCCCAAAAAacaaagttctgtcatcatttacttacaacTATGCCAATGCAATTATGCAGGTCTCTATACAGTTAAATATAAGATAGGTTGTAGAATGTttcaagcgttttttttttttttttttacataaaaattaaagaaaCTTTTGctaaaatatctttacatttattCCAAAAAATAATTAACTCCAAAGAGCGTTGCATTGACAGTGGGTGAACAATGACAACATTTAAGAAAACCGTAAAACTTTAATATCGTTGAttttccttaaagggatagtttcctttatttattcctATATTATTTATTCTTATAAAAGCAGAAGAagatactttaaaaaatgctggttgctggcacccattgactcccatagtaaattttcctactatggaagtcaatggatgccAGACACCAGCACTTTTCaaaatattgtattaaattaaatctaaaggctttcaaaaaaattaaaagttcatTTTCATTTGAACGATTCCCTTTATAGTCCACTACACCACAAACCTACAACAGTATTTAATGCTGGAACTTAATACTATAGTATGCATTAACAAAGTGTGATATACTATGATATATCAACCCTTACTATTCCCTTTATGGTCCTATTATTTATGATCAATATAtaccacacacacagacttgtttCTTTCTCCCAGCGGGGACTTTTACTTTTACCCATGGGGACCATAATTTTGGTTTCCATGGTGACAAGTCCCTATGTGTCTGTGCATTCAGACTTAAGTTTTCTCTTGGAAATAAAACAagtacacacttacacacacatacttatttttatatcccaatgggGACTCTCATAGATGTAATGATGTGTCTATTATACAAACATATATTCTAACCCCCCCTACCccaaaacccaaccctcacaagaaaaaaaatctgcctttttacatttttaaaagcatgtttacCCATGGGGACCTCGATTTTGGTTTGGTTTCAATGGGGACACAACTTCATATGTTTGTGGGTATTCTGGTTATAGTCCCCtcttggaaataaaacaaatacatacctATGCTTTACAGAGACTTGTTCATATATCGAAATGGGGACTCCCATAGATGTAATGATGTTTCTATTACACAAACCATATATTCTGACccaaaacccaaccctcacacgAAAAATAAATCTgccttattacatttttaaaagcatgtttacCCATGGGGACCTCAATTTTGGTTTAATTTCAATGGTGACACAACTTCATATGTGTCTTTGGGTATTCTGGTTATAGTCCGCTCTTGGAAACAAAACAAGTACATACCTCTGCTTGAGCAGGGCCACATCTTCAGCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008516 lncRNA upstream 124415 3203487 ~ 3206698 (+) True XLOC_003160
TCONS_00008381 lncRNA upstream 400539 2930179 ~ 2930574 (+) True XLOC_003157
TCONS_00006228 lncRNA upstream 502438 2827553 ~ 2828675 (+) True XLOC_003156
TCONS_00006224 lncRNA upstream 600675 2710557 ~ 2730438 (+) False XLOC_003154
TCONS_00006213 lncRNA upstream 715090 2615070 ~ 2616023 (+) True XLOC_003149
TCONS_00006252 lncRNA downstream 252315 3586029 ~ 3590937 (+) True XLOC_003168
TCONS_00008518 lncRNA downstream 282036 3615750 ~ 3735803 (+) True XLOC_003169
TCONS_00008519 lncRNA downstream 437552 3771266 ~ 3783125 (+) True XLOC_003170
TCONS_00006257 lncRNA downstream 692565 4026279 ~ 4086851 (+) True XLOC_003173
TCONS_00008382 lncRNA downstream 2143134 5476848 ~ 5477683 (+) False XLOC_003175
TCONS_00006243 mRNA upstream 12366 3308656 ~ 3318747 (+) True XLOC_003163
TCONS_00006242 mRNA upstream 39342 3281899 ~ 3291771 (+) True XLOC_003162
TCONS_00006241 mRNA upstream 41317 3279039 ~ 3289796 (+) False XLOC_003162
TCONS_00006240 mRNA upstream 59093 3254524 ~ 3272020 (+) True XLOC_003161
TCONS_00006239 mRNA upstream 59681 3254252 ~ 3271432 (+) False XLOC_003161
TCONS_00006244 mRNA downstream 165397 3499111 ~ 3525259 (+) False XLOC_003165
TCONS_00006245 mRNA downstream 165423 3499137 ~ 3521095 (+) False XLOC_003165
TCONS_00006247 mRNA downstream 167955 3501669 ~ 3521095 (+) True XLOC_003165
TCONS_00006248 mRNA downstream 205274 3538988 ~ 3566250 (+) True XLOC_003166
TCONS_00006249 mRNA downstream 242249 3575963 ~ 3584553 (+) False XLOC_003167
TCONS_00006233 other upstream 154343 3176686 ~ 3176770 (+) True XLOC_003159
TCONS_00006226 other upstream 583316 2745064 ~ 2747797 (+) True XLOC_003154
TCONS_00006215 other upstream 681719 2633791 ~ 2649394 (+) False XLOC_003150
TCONS_00006199 other upstream 1140383 2190621 ~ 2190730 (+) True XLOC_003138
TCONS_00006172 other upstream 1784882 1546117 ~ 1546231 (+) True XLOC_003126
TCONS_00006246 other downstream 165476 3499190 ~ 3514108 (+) False XLOC_003165
TCONS_00006254 other downstream 632013 3965727 ~ 3968309 (+) True XLOC_003171
TCONS_00006260 other downstream 2148039 5481753 ~ 5481884 (+) True XLOC_003176
TCONS_00006262 other downstream 2197729 5531443 ~ 5531576 (+) True XLOC_003178
TCONS_00006273 other downstream 2546861 5880575 ~ 5923741 (+) False XLOC_003185

Expression Profile

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