Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00006254 |
| length | 773 |
| RNA type | processed_transcript |
| GC content | 0.49 |
| exon number | 6 |
| gene id | XLOC_003171 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 3959495 ~ 3971035 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0042127 | regulation of cell population proliferation | biological_process |
| GO:0003407 | neural retina development | biological_process |
| GO:0000467 | exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | biological_process |
| GO:0007096 | regulation of exit from mitosis | biological_process |
| GO:0045664 | regulation of neuron differentiation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005730 | nucleolus | cellular_component |
| GO:0005525 | GTP binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-616 | Predicted to enable GTP binding activity. Acts upstream of or within several processes, including exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); neural retina development; and regulation of exit from mitosis. Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in head; immature eye; midbrain; and somite. Orthologous to human GNL3 (G protein nucleolar 3). |
| ensembl_id | ENSDART00000122833 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00008519 | lncRNA | upstream | 182602 | 3771266 ~ 3783125 (+) | True | XLOC_003170 |
| TCONS_00008518 | lncRNA | upstream | 229924 | 3615750 ~ 3735803 (+) | True | XLOC_003169 |
| TCONS_00006252 | lncRNA | upstream | 374790 | 3586029 ~ 3590937 (+) | True | XLOC_003168 |
| TCONS_00008517 | lncRNA | upstream | 632013 | 3331113 ~ 3333714 (+) | True | XLOC_003164 |
| TCONS_00008516 | lncRNA | upstream | 759029 | 3203487 ~ 3206698 (+) | True | XLOC_003160 |
| TCONS_00006257 | lncRNA | downstream | 57970 | 4026279 ~ 4086851 (+) | True | XLOC_003173 |
| TCONS_00008382 | lncRNA | downstream | 1508539 | 5476848 ~ 5477683 (+) | False | XLOC_003175 |
| TCONS_00008383 | lncRNA | downstream | 1518338 | 5486647 ~ 5489708 (+) | True | XLOC_003175 |
| TCONS_00008384 | lncRNA | downstream | 1634031 | 5602340 ~ 5602721 (+) | True | XLOC_003180 |
| TCONS_00006271 | lncRNA | downstream | 1874368 | 5842677 ~ 5848072 (+) | True | XLOC_003184 |
| TCONS_00006251 | mRNA | upstream | 372609 | 3585934 ~ 3593118 (+) | False | XLOC_003168 |
| TCONS_00006249 | mRNA | upstream | 381174 | 3575963 ~ 3584553 (+) | False | XLOC_003167 |
| TCONS_00006250 | mRNA | upstream | 381946 | 3578543 ~ 3583781 (+) | True | XLOC_003167 |
| TCONS_00006248 | mRNA | upstream | 399477 | 3538988 ~ 3566250 (+) | True | XLOC_003166 |
| TCONS_00006244 | mRNA | upstream | 440468 | 3499111 ~ 3525259 (+) | False | XLOC_003165 |
| TCONS_00006255 | mRNA | downstream | 21094 | 3989403 ~ 3993738 (+) | True | XLOC_003172 |
| TCONS_00006256 | mRNA | downstream | 57920 | 4026229 ~ 4132662 (+) | False | XLOC_003173 |
| TCONS_00006258 | mRNA | downstream | 985655 | 4953964 ~ 5463254 (+) | True | XLOC_003174 |
| TCONS_00006259 | mRNA | downstream | 1500320 | 5468629 ~ 5493191 (+) | False | XLOC_003175 |
| TCONS_00006261 | mRNA | downstream | 1531352 | 5499661 ~ 5515922 (+) | True | XLOC_003177 |
| TCONS_00006246 | other | upstream | 451619 | 3499190 ~ 3514108 (+) | False | XLOC_003165 |
| TCONS_00006233 | other | upstream | 788957 | 3176686 ~ 3176770 (+) | True | XLOC_003159 |
| TCONS_00006226 | other | upstream | 1217930 | 2745064 ~ 2747797 (+) | True | XLOC_003154 |
| TCONS_00006215 | other | upstream | 1316333 | 2633791 ~ 2649394 (+) | False | XLOC_003150 |
| TCONS_00006199 | other | upstream | 1774997 | 2190621 ~ 2190730 (+) | True | XLOC_003138 |
| TCONS_00006260 | other | downstream | 1513444 | 5481753 ~ 5481884 (+) | True | XLOC_003176 |
| TCONS_00006262 | other | downstream | 1563134 | 5531443 ~ 5531576 (+) | True | XLOC_003178 |
| TCONS_00006273 | other | downstream | 1912266 | 5880575 ~ 5923741 (+) | False | XLOC_003185 |
| TCONS_00006283 | other | downstream | 2065933 | 6034242 ~ 6037553 (+) | True | XLOC_003188 |
| TCONS_00006299 | other | downstream | 2168012 | 6136321 ~ 6144643 (+) | True | XLOC_003192 |
