Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00062800 |
| length | 790 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 10 |
| gene id | XLOC_032134 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007117.7 |
| NCBI id | CM002890.2 |
| chromosome length | 60270059 |
| location | 33076839 ~ 33095766 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006486 | protein glycosylation | biological_process |
| GO:0006493 | protein O-linked glycosylation | biological_process |
| GO:0016266 | O-glycan processing | biological_process |
| GO:0030173 | integral component of Golgi membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0016757 | transferase activity, transferring glycosyl groups | molecular_function |
| GO:0047223 | beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity | molecular_function |
| GO:0008375 | acetylglucosaminyltransferase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-070112-991 | Predicted to enable beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity. Predicted to be involved in O-glycan processing. Predicted to act upstream of or within protein glycosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane. Is expressed in several structures, including axis; fin bud; myotome; nervous system; and shield. Human ortholog(s) of this gene implicated in lissencephaly; muscular dystrophy (multiple); and retinitis pigmentosa. Orthologous to human POMGNT1 (protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)). |
| ensembl_id | ENSDART00000122242 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00064663 | lncRNA | upstream | 37544 | 33037599 ~ 33039353 (+) | True | XLOC_032133 |
| TCONS_00064662 | lncRNA | upstream | 39788 | 33036576 ~ 33037109 (+) | True | XLOC_032132 |
| TCONS_00064869 | lncRNA | upstream | 39796 | 32970553 ~ 33037101 (+) | False | XLOC_032132 |
| TCONS_00064661 | lncRNA | upstream | 481740 | 32521642 ~ 32595157 (+) | False | XLOC_032129 |
| TCONS_00064664 | lncRNA | downstream | 188836 | 33280353 ~ 33281036 (+) | True | XLOC_032135 |
| TCONS_00062803 | lncRNA | downstream | 721771 | 33813288 ~ 33835181 (+) | True | XLOC_032137 |
| TCONS_00062804 | lncRNA | downstream | 726174 | 33817691 ~ 33819979 (+) | True | XLOC_032138 |
| TCONS_00064870 | lncRNA | downstream | 890122 | 33981639 ~ 33982494 (+) | True | XLOC_032141 |
| TCONS_00064665 | lncRNA | downstream | 892352 | 33983869 ~ 33984665 (+) | True | XLOC_032142 |
| TCONS_00062798 | mRNA | upstream | 115768 | 32882821 ~ 32961129 (+) | True | XLOC_032131 |
| TCONS_00062796 | mRNA | upstream | 232169 | 32834007 ~ 32844728 (+) | False | XLOC_032130 |
| TCONS_00062797 | mRNA | upstream | 232227 | 32834760 ~ 32844670 (+) | True | XLOC_032130 |
| TCONS_00062792 | mRNA | upstream | 569599 | 32415132 ~ 32507298 (+) | False | XLOC_032128 |
| TCONS_00062801 | mRNA | downstream | 445750 | 33537267 ~ 33558977 (+) | False | XLOC_032136 |
| TCONS_00062805 | mRNA | downstream | 789855 | 33881372 ~ 33897961 (+) | False | XLOC_032139 |
| TCONS_00062806 | mRNA | downstream | 794311 | 33885828 ~ 33900867 (+) | False | XLOC_032139 |
| TCONS_00062807 | mRNA | downstream | 806107 | 33897624 ~ 33910750 (+) | False | XLOC_032139 |
| TCONS_00062808 | mRNA | downstream | 806776 | 33898293 ~ 33910958 (+) | True | XLOC_032139 |
| TCONS_00062791 | other | upstream | 661043 | 32410848 ~ 32415854 (+) | False | XLOC_032128 |
| TCONS_00062789 | other | upstream | 673798 | 32393057 ~ 32403099 (+) | False | XLOC_032127 |
| TCONS_00062785 | other | upstream | 739843 | 32336301 ~ 32337054 (+) | False | XLOC_032127 |
| TCONS_00062778 | other | upstream | 1659276 | 31413913 ~ 31417621 (+) | True | XLOC_032119 |
| TCONS_00062776 | other | upstream | 1711371 | 31365446 ~ 31365526 (+) | True | XLOC_032118 |
| TCONS_00062802 | other | downstream | 449329 | 33540846 ~ 33550502 (+) | True | XLOC_032136 |
| TCONS_00062812 | other | downstream | 840231 | 33931748 ~ 33934027 (+) | False | XLOC_032140 |
| TCONS_00062813 | other | downstream | 845862 | 33937379 ~ 33941842 (+) | True | XLOC_032140 |
| TCONS_00062831 | other | downstream | 2703282 | 35794799 ~ 35795619 (+) | True | XLOC_032155 |
| TCONS_00062848 | other | downstream | 3373830 | 36465347 ~ 36472948 (+) | False | XLOC_032162 |
