RNA id: TCONS_00062823


Basic Information

Item Value
RNA id TCONS_00062823
length 2451
RNA type mRNA
GC content 0.45
exon number 13
gene id XLOC_032148
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 34868156 ~ 34895175 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGGCACCAATCTGACTGTCAGCTGCCAGACATACACTGAACGCTGTGGAAGGCGCTTTGCCATAGACTTCAATGGACATACTGTTTTTGAAGCAGTTAATTGTTCTGTAATAACAACGCACTTAGTCATCAATCAGCCCAGCTCTTGGCTACGCTGCAAGGTGAAGGAAGGAGATACATGGCACCTGGTCTGCGGACGAGATCTCAAGGCTGGCTTGATTCCAAGCACACCAGACATAATGCAAATTTTGCTTGAAAATGGTTCTCGTTTCCCTACAATTTACTGGAATGGTTCTGACAATCATTTCAAACCAAGTCTGAGGTACAGAAGAGCACATGGTAACCACGCCTGGGTGCTGGGAAATATAGCAGTTGTCCGGATTGGATGTGTTTTCTTGCAAGAACCCTTAGAACCACTGATCTCCTATCAGTTTGAGCTCAGAGTGTGTGTTAGTTCAGCAAACTGCAGCATGTGGAGTAAACCCTTTAATATTACCAGCCCTGGAATAGCACCCTCAGAGAAAGTTGACGTGTGGGCTGTGATTAACAGAAGCAGCGCTCGTGAACCTCAGAATGTCACGGTTTTGTGGAAGAGCTATAGACCAGAATATTACAATGGAGAATTATTATATTACAAGTTGTCCTATAAACAAGAAGGCAAGATCCAGGAGGTGATTTGCTCACCTGAGCTCACTCAGCAGACTCTTCAGCTGAACGTGGCAGACGTCAACATCAGTGTTGTGATGTCATATGGCTCCTCCCCTCCTGCACAAGTCAACTTCAAACGCACAGGTAAAGCAGCTCCAGTGATTACAAATGTAATTCCGGCAGCATCTGGCATCTTAACTCTGTCCTGGAACGTGTCTCATTACACTGAGGAAGAGCAGAAGGGCATTCTGGGTTTTGTTGTACAGTGGCAATTTAACCCACAGCACCTAGAATGGAAGCGATTTGGAAAAGACTGCACTTTTACATCCCTACAAGGTATGCAAGCTGGTGTCTTGTATAATTTTTCTTTGTATGCTGAAGAAGCCAATGGCATTTCACACCCTGCCTTGGTCCAGGTTTATGCAAAACAAGAGCAGCCTCTAGCTGGTCCAGATGTATCAGTAACCAATGTAGGAGAAGGGCAGATTTTAATTCAATGGGATGAACTGAGCCAAGAAAAGCAAAGGGGATTTATCACAAACTACACCATTTACTTCCAGAGGCACAGAGACAAGCCACTTGAAACCCggtttacagagaatggccagaaaaagaaagaatatccagtgagcagcagttctgtggccACAGATGCCGtattgatgccagaagtcagaggagaatggccagactggttccagctgataaacagtaactcaaataaccattacaaccaagAAACGGTGCCCTACAAATTTCCTAGACGTTTGATTTGGGAGCTACGAGGCCCACAGGAATGTTTTGATATCCTGGTCTCTGCATGGAATTCAGCAGGTGAAGGACCCAAAGGAAAACCGACCACCTGTTGCTGTCCCAGCAAAGAATCAAATGGTCAACCAGGTACAGACAAGGCAACAGttcctttattaatctgggatcgctacagcggaatgaaccaccaacttatccagtgcatgttttacgcagtggatgcccttccagcggcaaccgatcactgggaaacatccatacacactcattcacgcacatatactacggacaacttagcttacccaattcccctgtaccgcatgtctttggactgtgggggaaaccgaagcacccagaggaaacccacAATGATGAAAATGTGCATGTCCATAGGAGTCTCTTGGATTTTCGAGAATTTACCAAAATTCGACAACAGCAATGCTATAAAACTACTTAAgGACGACAGCTATGGCCCCTGGCAGCCTCTTCCTGGAGACAACGATCCTCCTTTAACTCCCATTGAAGAACTCAGTGTGTCATGGGAGAGGAAAGACTCTTATCCAACTGTTCTTCATGTCACAGAAACACCCCCAACAGATCCACTCTTAATCGATTCTCCTTATAAGCCTCAATTATTGACCGCTTCACAGAGAAACGAAGATATCACCGAGACTACAGAGGAGGAGCTGAAAGAAGAAGACCAGTTCCCTTTCTTGATGTCTCCACATCATGACTTCACTTGGGATTTACCCAGTATTCCAGTCGTACATGGACGTCTTAATAGCTTCATAGCCATGGATGGAGCACTGGGATCTTTGGGCAATCTTGAAGACCTCCTCGTTCCCCGCCAGGCAACCTCTGATAAAGATGGAGGAGTGAATGAGAATGACATGATTATGGGAACAGGAGATTTAGGTCACAGCTCTTTCGTTGGTCAAACTGTACTACGCAATGACCGAGAGAGTTGCCTCTTTAATTCTAGCCCATACTCACCACAAGGCCTTTGCCATAATTTTTCAGTTGCAGAAGAA

Function

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0004896 cytokine receptor activity molecular_function
GO:0019955 cytokine binding molecular_function

KEGG:

id description
ko04630 JAK-STAT signaling pathway
ko04060 Cytokine-cytokine receptor interaction
ko04659 Th17 cell differentiation
ko05200 Pathways in cancer
ko05321 Inflammatory bowel disease
ko04050 Cytokine receptors

ZFIN:

id description
ZDB-GENE-080107-5 Predicted to enable cytokine binding activity and cytokine receptor activity. Predicted to be involved in cytokine-mediated signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in external side of plasma membrane. Human ortholog(s) of this gene implicated in several diseases, including autoimmune disease (multiple); inflammatory bowel disease (multiple); pulmonary hypertension; rhinitis; and systemic scleroderma. Orthologous to human IL23R (interleukin 23 receptor).

Ensembl:

ensembl_id ENSDART00000149356

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062819 lncRNA upstream 360238 34487776 ~ 34510136 (+) True XLOC_032146
TCONS_00064667 lncRNA upstream 360471 34474891 ~ 34509903 (+) False XLOC_032146
TCONS_00064668 lncRNA upstream 364828 34484566 ~ 34505546 (+) False XLOC_032146
TCONS_00062818 lncRNA upstream 364828 34487776 ~ 34505546 (+) False XLOC_032146
TCONS_00062817 lncRNA upstream 385631 34442409 ~ 34484743 (+) False XLOC_032146
TCONS_00064871 lncRNA downstream 47742 34942605 ~ 34943518 (+) True XLOC_032150
TCONS_00064872 lncRNA downstream 82837 34977700 ~ 34980647 (+) True XLOC_032151
TCONS_00062830 lncRNA downstream 489328 35384191 ~ 35393308 (+) True XLOC_032154
TCONS_00064873 lncRNA downstream 899794 35794657 ~ 35824376 (+) False XLOC_032155
TCONS_00064669 lncRNA downstream 1021390 35916253 ~ 35946727 (+) False XLOC_032156
TCONS_00062821 mRNA upstream 58866 34512313 ~ 34811508 (+) True XLOC_032147
TCONS_00062820 mRNA upstream 64579 34511886 ~ 34805795 (+) False XLOC_032147
TCONS_00062815 mRNA upstream 797210 34038963 ~ 34073164 (+) False XLOC_032144
TCONS_00062816 mRNA upstream 823116 34039031 ~ 34047258 (+) True XLOC_032144
TCONS_00062814 mRNA upstream 834143 34028532 ~ 34036231 (+) True XLOC_032143
TCONS_00062824 mRNA downstream 13734 34908597 ~ 34920826 (+) False XLOC_032149
TCONS_00062825 mRNA downstream 13734 34908597 ~ 34925690 (+) True XLOC_032149
TCONS_00062826 mRNA downstream 157858 35052721 ~ 35060937 (+) False XLOC_032152
TCONS_00062827 mRNA downstream 157977 35052840 ~ 35061467 (+) True XLOC_032152
TCONS_00062829 mRNA downstream 467362 35362225 ~ 35366944 (+) False XLOC_032153
TCONS_00062813 other upstream 928532 33937379 ~ 33941842 (+) True XLOC_032140
TCONS_00062812 other upstream 936347 33931748 ~ 33934027 (+) False XLOC_032140
TCONS_00062802 other upstream 1319872 33540846 ~ 33550502 (+) True XLOC_032136
TCONS_00062791 other upstream 2454520 32410848 ~ 32415854 (+) False XLOC_032128
TCONS_00062789 other upstream 2467275 32393057 ~ 32403099 (+) False XLOC_032127
TCONS_00062831 other downstream 899936 35794799 ~ 35795619 (+) True XLOC_032155
TCONS_00062848 other downstream 1570484 36465347 ~ 36472948 (+) False XLOC_032162
TCONS_00062849 other downstream 1577858 36472721 ~ 36542102 (+) True XLOC_032162
TCONS_00062850 other downstream 1616949 36511812 ~ 36511930 (+) True XLOC_032163
TCONS_00062861 other downstream 2095707 36990570 ~ 36990684 (+) True XLOC_032171

Expression Profile

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