RNA id: TCONS_00062831


Basic Information

Item Value
RNA id TCONS_00062831
length 277
RNA type processed_transcript
GC content 0.40
exon number 2
gene id XLOC_032155
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 35794657 ~ 35824376 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATCAGTTCGAATCATTTAGTCTACGAGCAAGCAGCGTGTTGTGCTTTTCTGAAAAACAAGAACTCGACACCTTTGATTACATGAGGATGATGGCAGCACTAAATTAATGATATATTTACCTTCAATCAATAGAAAGAGCCAAATGCATCGTATGACTGCAGTGAGGAAAGCGTGTCAAGTTCAACTGAGCCACGTGGAGTGTACGATTGACACAGGAATTCTTCATGATTTACCACAGCTTATTGGAGTGAAGAAAAGAAAACTGCATGGATATGG

Function

GO:

id name namespace
GO:0006399 tRNA metabolic process biological_process
GO:0006400 tRNA modification biological_process
GO:0001510 RNA methylation biological_process
GO:0009451 RNA modification biological_process
GO:0008033 tRNA processing biological_process
GO:0098536 deuterosome cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008173 RNA methyltransferase activity molecular_function
GO:0140101 catalytic activity, acting on a tRNA molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000151760

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062830 lncRNA upstream 401491 35384191 ~ 35393308 (+) True XLOC_032154
TCONS_00064872 lncRNA upstream 814152 34977700 ~ 34980647 (+) True XLOC_032151
TCONS_00064871 lncRNA upstream 851281 34942605 ~ 34943518 (+) True XLOC_032150
TCONS_00062819 lncRNA upstream 1284663 34487776 ~ 34510136 (+) True XLOC_032146
TCONS_00064667 lncRNA upstream 1284896 34474891 ~ 34509903 (+) False XLOC_032146
TCONS_00064669 lncRNA downstream 120634 35916253 ~ 35946727 (+) False XLOC_032156
TCONS_00064670 lncRNA downstream 120634 35916253 ~ 36051503 (+) False XLOC_032156
TCONS_00064874 lncRNA downstream 120634 35916253 ~ 36052426 (+) False XLOC_032156
TCONS_00064875 lncRNA downstream 120634 35916253 ~ 36054886 (+) False XLOC_032156
TCONS_00064876 lncRNA downstream 120634 35916253 ~ 36061114 (+) False XLOC_032156
TCONS_00062829 mRNA upstream 427855 35362225 ~ 35366944 (+) False XLOC_032153
TCONS_00062828 mRNA upstream 427855 35362225 ~ 35366944 (+) True XLOC_032153
TCONS_00062827 mRNA upstream 733332 35052840 ~ 35061467 (+) True XLOC_032152
TCONS_00062826 mRNA upstream 733862 35052721 ~ 35060937 (+) False XLOC_032152
TCONS_00062825 mRNA upstream 869109 34908597 ~ 34925690 (+) True XLOC_032149
TCONS_00062845 mRNA downstream 586090 36381709 ~ 36391687 (+) True XLOC_032159
TCONS_00062846 mRNA downstream 664278 36459897 ~ 36463695 (+) False XLOC_032161
TCONS_00062847 mRNA downstream 664343 36459962 ~ 36462231 (+) True XLOC_032161
TCONS_00062851 mRNA downstream 999606 36795225 ~ 36818959 (+) False XLOC_032165
TCONS_00062854 mRNA downstream 1026002 36821621 ~ 36837536 (+) True XLOC_032166
TCONS_00062813 other upstream 1852957 33937379 ~ 33941842 (+) True XLOC_032140
TCONS_00062812 other upstream 1860772 33931748 ~ 33934027 (+) False XLOC_032140
TCONS_00062802 other upstream 2244297 33540846 ~ 33550502 (+) True XLOC_032136
TCONS_00062791 other upstream 3378945 32410848 ~ 32415854 (+) False XLOC_032128
TCONS_00062789 other upstream 3391700 32393057 ~ 32403099 (+) False XLOC_032127
TCONS_00062848 other downstream 669728 36465347 ~ 36472948 (+) False XLOC_032162
TCONS_00062849 other downstream 677102 36472721 ~ 36542102 (+) True XLOC_032162
TCONS_00062850 other downstream 716193 36511812 ~ 36511930 (+) True XLOC_032163
TCONS_00062861 other downstream 1194951 36990570 ~ 36990684 (+) True XLOC_032171
TCONS_00062862 other downstream 1398289 37193908 ~ 37216188 (+) True XLOC_032172

Expression Profile

//