RNA id: TCONS_00064877


Basic Information

Item Value
RNA id TCONS_00064877
length 2031
lncRNA type antisense_over
GC content 0.38
exon number 6
gene id XLOC_032156
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 35916253 ~ 36259154 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tatttttatgcaaaacagcaatcaaaattaattaataaatcaataaattgtaGCATGAAGAATGGTTAACGTGTAGCTGAATTTCCTGAAGCTTACAGTAGTCAAAAATTAGTAGGATGTCTACAGGCCCTTGCCTTGAATTATGTGCATTAGAAACAATAAGATTAAGGTGATTATAAGCCTGTTTTTTGTGATAAAAATTGGCATAAACCTATATTTAATAAGCTggttgcactgttgcctcacagcagaaaTGTCCCTGGTTTGAATCCCGACTGAGCCTGAATCCTGGATATTCTTCCCtgttctctgggtgctccagcttTATGACAGCAAATCTATGGCAAATAGAACCGAACACACGGGTGATGGTTATGCTTGCGGTGTTCTGAACTGCAGGAGGATAACAGATCCAGACACGAGGAAACAGGAGACTGGactggaaagaaaaaaaagaaataaaaaatcccTCTGTGAGAAGAACATCCAGCGCACTAAAGAAAGGCAGAGACATTAACAGATTGTCGCTGCTGACCTGAGATCAGTGATGACACCTGAAGACACATAAAAAGAGCTGCCCAGACCCTCGTGCCACTCCAGCAGATTGGATATCAGGAGCCGGATGAAAACAGTCTCGCGTGGAGGGAGACGGGCCACATCAGTGATTATCCTCTCAGCCAGAGTCATCACCAAGCATCAGGAGGCCCGATCACTCGCTCTGTCCAAAGCCAACACTGCACGCCTCTTCACAATCACATCTGCATTATTAACAGCAAGCCACAAaaaaaaggaaaATCCTAAAGATATGGACACTCTTCAGGGACGAGAAATGGTCTATTCGATGCATGCTACATTATGCTTCAGTGAAAGTGTCATGTTGAGCTCCTGTCCTGGGATCAGTAAAATGTTGCCCGGCATCATGGCGGAAAATTGATAAGGAGAGATGCTGATCTCTGTCAGCTTTACACACAAATTGAAAAGCTCAAGTTCACATTGCAGGTATCTGCATTTAGATGGAGTTAGAGCATATGTGATTGAATGACATGAACCTGAAAAATAAATGGCGGCTGGATAATAGCAGCAGGAATGTGAGTTCTGCATTTGTGGTGGAACAGCAATCATCTATTAATCAACAAATTCAATACCAGGAGATTTTGTCCTTGTACTACACAAAAACCTCCACTTTAATATTTTCTCTTCCTTTTTGAAAGTCATTACCTGTTGAAAATGGATCTTATTAGAGGcccttttttttccctcttcctATTTCAGACTTTGTACATGATTTACATTGACAGGGACTCAATCCCAAATTCAAGGGAGCTATTATACATGGATGAATTGTGGTAGATGAATCATCATGAAGTTGAGGTATTGTATGCACagaatgttcttttttttctttcctacATTTTTTGCTTTACATGTTTAAATGAGAGCTCCCATAATGGTGTCCGCAGTTTGCTTTAAAATCAACTAGtttcttgttttaaataattttaaaccaaaatgtttcaaattatttcttattatttagtttatttattgtcCTTAAAATATTGTTTCATCACGAagcaaagtaaaaataaacatattgagACCTATATCAACAAAGAGTAATTGGTCAAGctacatttcaatttatttaaagtgatcaacaagtttttacatttttaaatcagcctctttacttttgtttttgtgttcgGTGGTGCGATTTAAATAATTTCTCGTCATTTCGCAATTTGTGCGCCTTTTTGATGCAGTCAGtctatttttcttcatttttcaaCTGAGACTTTCATGCACCATACAGTATGTaggctagtttatgaagattaccATGAGAAAGGCAAGGATGACTACGCAGGAGACAGAGGGAGACGGCGAATTTAACATGAATGATGCTGACCGTTTACACGATAATAAGACACATTTTGCTCAATCATGTCCAGTTCACACATGTGCTTTACAAATGCTTAAGGTAAACAGTCTTTTGTACACTTCTGATCATGCTGCATGGGATTTCTC

Function

GO:

id name namespace
GO:0070898 RNA polymerase III preinitiation complex assembly biological_process
GO:0008033 tRNA processing biological_process
GO:0044422 obsolete organelle part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:1902555 endoribonuclease complex cellular_component
GO:0033204 ribonuclease P RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064873 lncRNA upstream 91877 35794657 ~ 35824376 (+) False XLOC_032155
TCONS_00062830 lncRNA upstream 522945 35384191 ~ 35393308 (+) True XLOC_032154
TCONS_00064872 lncRNA upstream 935606 34977700 ~ 34980647 (+) True XLOC_032151
TCONS_00064871 lncRNA upstream 972735 34942605 ~ 34943518 (+) True XLOC_032150
TCONS_00062819 lncRNA upstream 1406117 34487776 ~ 34510136 (+) True XLOC_032146
TCONS_00062835 lncRNA downstream 21851 36281005 ~ 36284259 (+) False XLOC_032158
TCONS_00062836 lncRNA downstream 22119 36281273 ~ 36284870 (+) False XLOC_032158
TCONS_00062837 lncRNA downstream 22119 36281273 ~ 36285111 (+) False XLOC_032158
TCONS_00062838 lncRNA downstream 22519 36281673 ~ 36284699 (+) False XLOC_032158
TCONS_00062839 lncRNA downstream 22548 36281702 ~ 36284606 (+) False XLOC_032158
TCONS_00062829 mRNA upstream 549309 35362225 ~ 35366944 (+) False XLOC_032153
TCONS_00062828 mRNA upstream 549309 35362225 ~ 35366944 (+) True XLOC_032153
TCONS_00062827 mRNA upstream 854786 35052840 ~ 35061467 (+) True XLOC_032152
TCONS_00062826 mRNA upstream 855316 35052721 ~ 35060937 (+) False XLOC_032152
TCONS_00062825 mRNA upstream 990563 34908597 ~ 34925690 (+) True XLOC_032149
TCONS_00062845 mRNA downstream 122555 36381709 ~ 36391687 (+) True XLOC_032159
TCONS_00062846 mRNA downstream 200743 36459897 ~ 36463695 (+) False XLOC_032161
TCONS_00062847 mRNA downstream 200808 36459962 ~ 36462231 (+) True XLOC_032161
TCONS_00062851 mRNA downstream 536071 36795225 ~ 36818959 (+) False XLOC_032165
TCONS_00062854 mRNA downstream 562467 36821621 ~ 36837536 (+) True XLOC_032166
TCONS_00062831 other upstream 120634 35794799 ~ 35795619 (+) True XLOC_032155
TCONS_00062813 other upstream 1974411 33937379 ~ 33941842 (+) True XLOC_032140
TCONS_00062812 other upstream 1982226 33931748 ~ 33934027 (+) False XLOC_032140
TCONS_00062802 other upstream 2365751 33540846 ~ 33550502 (+) True XLOC_032136
TCONS_00062791 other upstream 3500399 32410848 ~ 32415854 (+) False XLOC_032128
TCONS_00062848 other downstream 206193 36465347 ~ 36472948 (+) False XLOC_032162
TCONS_00062849 other downstream 213567 36472721 ~ 36542102 (+) True XLOC_032162
TCONS_00062850 other downstream 252658 36511812 ~ 36511930 (+) True XLOC_032163
TCONS_00062861 other downstream 731416 36990570 ~ 36990684 (+) True XLOC_032171
TCONS_00062862 other downstream 934754 37193908 ~ 37216188 (+) True XLOC_032172

Expression Profile

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