RNA id: TCONS_00062834


Basic Information

Item Value
RNA id TCONS_00062834
length 1111
lncRNA type inter_gene
GC content 0.42
exon number 5
gene id XLOC_032157
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 36116704 ~ 36119890 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGAGTGAGTGTGGACGACGCTGGATCTTCTCACCGGCTGCCATGATCGAACAAACAGCAGAAATTAAGGCAGAGTCTGTATATGTGGACACTTACTATTTGCCCTCTCTACAGTTTCTCTTGTCTGTCCCCCACAAGCAGAGACCCACTGATAGACCGCTGTTACCAGTTCTAGGGCTGACACATCCGCACACGTCCACATCACAAGTGTATCCTGAAAAGATCAAGGAGGAGCATCACAACAGTTTCGTTGAAGTAGACATTCTTGTGGAAGCTTGATGAGTACACACCAGGTTTTGCAGCTAATGCATGCCAAAGGAGGAGCAGCTAGTTGCAAGATGCATCCTCTGCTGGACAGTTTaaatACACAGAACATTGAGGAAAAAAAGAGATGCTGTTGTCTGCTGCCTCAATAACTACCTCGGGGAAAGACAAGAAGATATGTTCCATGACTGGCAGgAATGTGAGGAGTACACAGACAAAACGATGAAGGAGATTGTGAAGCACAATTTGTCTATTGTGATCGGGGGAAAACAAGTGATGGAAGGATGAGGAAGCCAAACAGAGGCATGCATACTGCTGGGACTCATATGCAATTAACATTGAATATCCAAAGGAGCTGAAGAACACGTTTGAAGCTTTTCAAAAACTTTGTTTTAGAAAATGATGGGGCAAAACCACTGAAGAAGGTCCACAGCCTCAAAAATAAGCTCATGCAGTAGACATTTCTCCTCTTACTTAAAGAGGATCTTTTGTTTGGACATGCCTTGATGGAGTTGTAATggagtgttttatatatttttttctcttccatCATTTGCttcacacacagacaaagacCCATCCACTGTCTCAGCCCTCTCCATTGCTCTGTGTTTtcccccatattgacagaaaaggAATACTAATAGAAAGTGGCCTAAAGAATTTTGATCTCACCTACCGTCTTTTCTTCCccagttgtttgtttattttattctcatCCTATCTGCGAGAGTGAGAGTAAggacaaaaaataaagaattttgttttacttttttccgGATATTTGATACTGTACATGCACAAAAACAACcacaagtctgtgtgtgtgcttttggcTTTTAAAATAG

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0071599 otic vesicle development biological_process
GO:0006396 RNA processing biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0072175 epithelial tube formation biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0000469 cleavage involved in rRNA processing biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0000478 endonucleolytic cleavage involved in rRNA processing biological_process
GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0048634 regulation of muscle organ development biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0035148 tube formation biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0090501 RNA phosphodiester bond hydrolysis biological_process
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:0032040 small-subunit processome cellular_component
GO:0030688 preribosome, small subunit precursor cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0005488 binding molecular_function
GO:0034511 U3 snoRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko04623 Cytosolic DNA-sensing pathway
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064876 lncRNA upstream 55599 35916253 ~ 36061114 (+) False XLOC_032156
TCONS_00064881 lncRNA upstream 55599 35994025 ~ 36061114 (+) False XLOC_032156
TCONS_00064875 lncRNA upstream 61827 35916253 ~ 36054886 (+) False XLOC_032156
TCONS_00064874 lncRNA upstream 64287 35916253 ~ 36052426 (+) False XLOC_032156
TCONS_00064879 lncRNA upstream 64287 35916500 ~ 36052426 (+) False XLOC_032156
TCONS_00064883 lncRNA downstream 136206 36256096 ~ 36259154 (+) False XLOC_032156
TCONS_00064884 lncRNA downstream 136215 36256105 ~ 36257736 (+) True XLOC_032156
TCONS_00062835 lncRNA downstream 161115 36281005 ~ 36284259 (+) False XLOC_032158
TCONS_00062836 lncRNA downstream 161383 36281273 ~ 36284870 (+) False XLOC_032158
TCONS_00062837 lncRNA downstream 161383 36281273 ~ 36285111 (+) False XLOC_032158
TCONS_00062829 mRNA upstream 749769 35362225 ~ 35366944 (+) False XLOC_032153
TCONS_00062828 mRNA upstream 749769 35362225 ~ 35366944 (+) True XLOC_032153
TCONS_00062827 mRNA upstream 1055246 35052840 ~ 35061467 (+) True XLOC_032152
TCONS_00062826 mRNA upstream 1055776 35052721 ~ 35060937 (+) False XLOC_032152
TCONS_00062825 mRNA upstream 1191023 34908597 ~ 34925690 (+) True XLOC_032149
TCONS_00062845 mRNA downstream 261819 36381709 ~ 36391687 (+) True XLOC_032159
TCONS_00062846 mRNA downstream 340007 36459897 ~ 36463695 (+) False XLOC_032161
TCONS_00062847 mRNA downstream 340072 36459962 ~ 36462231 (+) True XLOC_032161
TCONS_00062851 mRNA downstream 675335 36795225 ~ 36818959 (+) False XLOC_032165
TCONS_00062854 mRNA downstream 701731 36821621 ~ 36837536 (+) True XLOC_032166
TCONS_00062831 other upstream 321094 35794799 ~ 35795619 (+) True XLOC_032155
TCONS_00062813 other upstream 2174871 33937379 ~ 33941842 (+) True XLOC_032140
TCONS_00062812 other upstream 2182686 33931748 ~ 33934027 (+) False XLOC_032140
TCONS_00062802 other upstream 2566211 33540846 ~ 33550502 (+) True XLOC_032136
TCONS_00062791 other upstream 3700859 32410848 ~ 32415854 (+) False XLOC_032128
TCONS_00062848 other downstream 345457 36465347 ~ 36472948 (+) False XLOC_032162
TCONS_00062849 other downstream 352831 36472721 ~ 36542102 (+) True XLOC_032162
TCONS_00062850 other downstream 391922 36511812 ~ 36511930 (+) True XLOC_032163
TCONS_00062861 other downstream 870680 36990570 ~ 36990684 (+) True XLOC_032171
TCONS_00062862 other downstream 1074018 37193908 ~ 37216188 (+) True XLOC_032172

Expression Profile

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