RNA id: TCONS_00062838


Basic Information

Item Value
RNA id TCONS_00062838
length 677
lncRNA type lincRNA
GC content 0.44
exon number 6
gene id XLOC_032158
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 36281005 ~ 36285111 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cattgtatgtggcgatctattttttacagtctatgctcgctatcccaaggttcattgcgatcccaaggttcactgcggttttccacaagCCTGTTTCTGCCTATCACCATGAGTGATTCCTCAATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTTTTGATGACAACTTGGTGATCTGCAGAAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATGTTCAACAATTTGGCCATCTCGCTGACCTGTTGATATCAGAAGACCCCAACAGCTCTGCAAAGCAAGTTGCAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGAGGcagaagcAAAGACAACAAAAAGAAGAAGTGATGTGGATGTCTTCGTCATATTGCATGactctgctgacccagcaacaaagaggagggtgttcaacatcatcctgctagtcaggattcttcaggagaagcagtggattcttgtggcagagatggtcaaccactataaatacctttcAACTCATCCTGGTTCTTTCAAAGAACTTTCTTGCTTGTTTGCTACTGAAA

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0038202 TORC1 signaling biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050793 regulation of developmental process biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000140317

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064883 lncRNA upstream 22519 36256096 ~ 36259154 (+) False XLOC_032156
TCONS_00064884 lncRNA upstream 23937 36256105 ~ 36257736 (+) True XLOC_032156
TCONS_00062833 lncRNA upstream 161783 36116704 ~ 36119890 (+) False XLOC_032157
TCONS_00062834 lncRNA upstream 161783 36116713 ~ 36119890 (+) False XLOC_032157
TCONS_00064882 lncRNA upstream 161783 36118425 ~ 36119890 (+) True XLOC_032157
TCONS_00064886 lncRNA downstream 130024 36414723 ~ 36415086 (+) True XLOC_032160
TCONS_00064887 lncRNA downstream 187886 36472585 ~ 36540735 (+) False XLOC_032162
TCONS_00064888 lncRNA downstream 187922 36472621 ~ 36476697 (+) False XLOC_032162
TCONS_00064889 lncRNA downstream 187922 36472621 ~ 36618498 (+) False XLOC_032162
TCONS_00064890 lncRNA downstream 187930 36472629 ~ 36573471 (+) False XLOC_032162
TCONS_00062829 mRNA upstream 914729 35362225 ~ 35366944 (+) False XLOC_032153
TCONS_00062828 mRNA upstream 914729 35362225 ~ 35366944 (+) True XLOC_032153
TCONS_00062827 mRNA upstream 1220206 35052840 ~ 35061467 (+) True XLOC_032152
TCONS_00062826 mRNA upstream 1220736 35052721 ~ 35060937 (+) False XLOC_032152
TCONS_00062825 mRNA upstream 1355983 34908597 ~ 34925690 (+) True XLOC_032149
TCONS_00062845 mRNA downstream 97010 36381709 ~ 36391687 (+) True XLOC_032159
TCONS_00062846 mRNA downstream 175198 36459897 ~ 36463695 (+) False XLOC_032161
TCONS_00062847 mRNA downstream 175263 36459962 ~ 36462231 (+) True XLOC_032161
TCONS_00062851 mRNA downstream 510526 36795225 ~ 36818959 (+) False XLOC_032165
TCONS_00062854 mRNA downstream 536922 36821621 ~ 36837536 (+) True XLOC_032166
TCONS_00062831 other upstream 486054 35794799 ~ 35795619 (+) True XLOC_032155
TCONS_00062813 other upstream 2339831 33937379 ~ 33941842 (+) True XLOC_032140
TCONS_00062812 other upstream 2347646 33931748 ~ 33934027 (+) False XLOC_032140
TCONS_00062802 other upstream 2731171 33540846 ~ 33550502 (+) True XLOC_032136
TCONS_00062791 other upstream 3865819 32410848 ~ 32415854 (+) False XLOC_032128
TCONS_00062848 other downstream 180648 36465347 ~ 36472948 (+) False XLOC_032162
TCONS_00062849 other downstream 188022 36472721 ~ 36542102 (+) True XLOC_032162
TCONS_00062850 other downstream 227113 36511812 ~ 36511930 (+) True XLOC_032163
TCONS_00062861 other downstream 705871 36990570 ~ 36990684 (+) True XLOC_032171
TCONS_00062862 other downstream 909209 37193908 ~ 37216188 (+) True XLOC_032172

Expression Profile

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