RNA id: TCONS_00062846


Basic Information

Item Value
RNA id TCONS_00062846
length 2225
RNA type mRNA
GC content 0.40
exon number 2
gene id XLOC_032161
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 36459897 ~ 36463695 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACCAACTCATTTCCAAATAATGTGCGAGAGTACATGAGAGCTTTTGTGCAAGGCAGAGCAGTTAACGGCTGACTGTAAAAGGGATAACCAGATAGATATGAGGAGGCAGAAAGGAATCTGACCAAAAAAAACATCCCATCTGTTTAAAAGCAAACGGGGAAACGCTTCAGTGTGACGAGGAGAAACACACATATCTCTGACAAATCTTCAAGGTCAACGGAATCAATGGACCTGGCGTTGTTTGTGATTATTGGCATGTGTGCCATGAAAGCTGTTGCTTCCTCATGTCCAGAAAGCTGCCAGTGCCAAGTGACCAAAATTGTCTGTCAAGGATTTTCAGTGAAAGAAATTCCACTCCCCATGCCCCCAACCATCAACGCTCTTGTTATCTCCAACACCAGCATTCAATCATTAAAACCATCGGATTTTCAGACTTTCGCTGAGACGCTTACACTGTTTGTAGCCAAAAATTCGAATATAACAGAGGTGGAACCTCATACATTTGATCAAGCTTTCAATCTCAATGTCTTAGGTTTCAGTGGGACGATGCTAACCTCTCTACCAGACAACCTGTTTCAGAATCTAACTGCATTAACAACTTTAACACTGAGTGGCAACAAACTAGAAGTTTTGCCATCATCTCTTCTTACTCCACTTGTAAATGTGAACAAATTAGACCTTAGCAAAAACCTTCTCAGCTCTCTGTCAGAAGATGCTTTTAGGGGTTTAGACCAACTAGAAATGCTCATGTTGCAGAGAAACTCAATCAAACAGCTTCACAGCAGCACTTTTCAGGGGCTCAGTCATCTCAGGTCCctgtttttacagcaaaatgaattAACGGATATACCAGCAGGCTTATTTGATGATTTGGTGAACCTTGAGGTATTGCATCTACAAGACAACAAAATCGAGCAATTGCCGGCAAATCTTTTCGCAAAAGTGCAGAAGCTAAAGAAACTCTACCTCTCCAGCAATAGGTTATCATTGCTTCCCAGTGGAATCTTTCTGAATCTTCCCAACCTTACTCATTTTTCACTGTACGACAACCGACTCAGTAGGCTAATGCCTGAGACTTTTGGCCCAATGGCCCTTCAAGAGCTTTGGCTGTATGACAACTTGTTAACCCACCTCGAGGAGAATGTGTTCAGCAATTTAACCAACATACGTCTTTTGGTAATCAGTAGGAACCGAATTCAGTACATCTCTCCCGGTGCATTCAATGGCCTGATAGAGCTTAAGGAGGTTTCCCTTCACACCAATCGATTAACCAATATTGAACCTGGGATTTTCAGAGGCCTTCCAAACTTAGCGAATATATCTATAGAGAACAATCAAATAAAGCAGATACCCATACAACTGTTAGATGGTGTGTCCCGTTTGTCTCTTCTGGAGATGCAAAACAATTCTCTACAAAACTTGCCCAAAGACTTTCTGAACACTTTGTCTATTGTTGAGAATGTTATTCTTCATGAAAATCCCTGGAGGTGTGATCAGGACATAATACCTTTTTGGGATTGGCTTTCACAGCATTCAGAGAAAGTGAAGAACCTTTCCCTCGTGATGTGCTCTTCTCCTCCACCCCTGAATGGTAGAATTGTGAGAGAGCTGATAGAGGATGACATCATGGTCCAAGAAATGACAACTATGACAACGGTTGATACTTCATCACATAACACACCCGCAAGTACAACCAAAAGGCCACCAGATTCAAACTTCACAACAATCTCAGATGAGAAAGAAGACCAAAGTGGAGGTGATGCTGCGGGTCAAGGTCTGTCCAAAGAAAAACTCATTATCATAGTTGCTATCATTTGTACTGCTGTCGTTGTTAGTCTCATCTCCTGTGTGTTATGGAGGAAGAACAAGCGAGGTAGTGAAAACTTAGACCGTCATAGAAAGACAAATGCAGTTATTTAGCATTATCTAAAGGctcaatgtgttgttttattatcTCTGTCTGTTTAAATAATGAGCATTGTCATTTTAACAGCTGTATTTTCTTTGGAAATTTTCTttctttgtaacattttttttctgtcctGCATGCATAGTTGAGCTTACTTACagtttgactgaaaaaaaaaaaaaatcaatgttgaTTGTATGATTTATTGATCATGATTTAATGAATTGTGTCATAATGTAAAGAAATGTACTGTATTGTGTGCAAATGACTGCACACATTCTGCAAatttgagttaaataaatatgtttcttcatg

Function

GO:

id name namespace
GO:0050919 negative chemotaxis biological_process
GO:0007411 axon guidance biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0048495 Roundabout binding molecular_function
GO:0008201 heparin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031113-8 Predicted to enable Roundabout binding activity and heparin binding activity. Predicted to be involved in axon guidance and negative chemotaxis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in cardiovascular system; hematopoietic system; ventral mesoderm; and yolk syncytial layer. Orthologous to human LRRC15 (leucine rich repeat containing 15).

Ensembl:

ensembl_id ENSDART00000104248

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064886 lncRNA upstream 44811 36414723 ~ 36415086 (+) True XLOC_032160
TCONS_00062837 lncRNA upstream 174786 36281273 ~ 36285111 (+) False XLOC_032158
TCONS_00062844 lncRNA upstream 174795 36282487 ~ 36285102 (+) True XLOC_032158
TCONS_00062843 lncRNA upstream 174967 36282472 ~ 36284930 (+) False XLOC_032158
TCONS_00062836 lncRNA upstream 175027 36281273 ~ 36284870 (+) False XLOC_032158
TCONS_00064887 lncRNA downstream 8890 36472585 ~ 36540735 (+) False XLOC_032162
TCONS_00064888 lncRNA downstream 8926 36472621 ~ 36476697 (+) False XLOC_032162
TCONS_00064889 lncRNA downstream 8926 36472621 ~ 36618498 (+) False XLOC_032162
TCONS_00064890 lncRNA downstream 8934 36472629 ~ 36573471 (+) False XLOC_032162
TCONS_00064891 lncRNA downstream 8965 36472660 ~ 36580278 (+) False XLOC_032162
TCONS_00062845 mRNA upstream 68210 36381709 ~ 36391687 (+) True XLOC_032159
TCONS_00062829 mRNA upstream 1092953 35362225 ~ 35366944 (+) False XLOC_032153
TCONS_00062828 mRNA upstream 1092953 35362225 ~ 35366944 (+) True XLOC_032153
TCONS_00062827 mRNA upstream 1398430 35052840 ~ 35061467 (+) True XLOC_032152
TCONS_00062826 mRNA upstream 1398960 35052721 ~ 35060937 (+) False XLOC_032152
TCONS_00062851 mRNA downstream 331530 36795225 ~ 36818959 (+) False XLOC_032165
TCONS_00062854 mRNA downstream 357926 36821621 ~ 36837536 (+) True XLOC_032166
TCONS_00062855 mRNA downstream 375814 36839509 ~ 36844020 (+) False XLOC_032167
TCONS_00062856 mRNA downstream 375935 36839630 ~ 36843887 (+) True XLOC_032167
TCONS_00062857 mRNA downstream 380432 36844127 ~ 36877587 (+) True XLOC_032168
TCONS_00062831 other upstream 664278 35794799 ~ 35795619 (+) True XLOC_032155
TCONS_00062813 other upstream 2518055 33937379 ~ 33941842 (+) True XLOC_032140
TCONS_00062812 other upstream 2525870 33931748 ~ 33934027 (+) False XLOC_032140
TCONS_00062802 other upstream 2909395 33540846 ~ 33550502 (+) True XLOC_032136
TCONS_00062791 other upstream 4044043 32410848 ~ 32415854 (+) False XLOC_032128
TCONS_00062848 other downstream 1652 36465347 ~ 36472948 (+) False XLOC_032162
TCONS_00062849 other downstream 9026 36472721 ~ 36542102 (+) True XLOC_032162
TCONS_00062850 other downstream 48117 36511812 ~ 36511930 (+) True XLOC_032163
TCONS_00062861 other downstream 526875 36990570 ~ 36990684 (+) True XLOC_032171
TCONS_00062862 other downstream 730213 37193908 ~ 37216188 (+) True XLOC_032172

Expression Profile

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