RNA id: TCONS_00064892


Basic Information

Item Value
RNA id TCONS_00064892
length 1372
lncRNA type antisense_over
GC content 0.48
exon number 6
gene id XLOC_032162
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 36465347 ~ 36618498 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAATGTCCATATGTAAACAGCAAATTAAGTGGCCTTATGTTGACCGTTTTTAAATACTCACCTATTAGAGTGCTCTGTCTGCTTTTTATTCTTGATATACTTTTATTGTTCTTTTATCCAGTCATTTAAAGCTTACTTAAGTTACACAACAAGGTTTGGTGAAGATAGCCGTGCAAACGAATGTGCCATCGTCTTTTgtaaagtaaacaaacagctcAAATAGTTTCAACACCTGCACCGTTCAACTTTTGAAGTAGAAACGTGGATGTGGGACGGatgAATGAAGTGGCCAAATTATGCTTCACCTCATGGAGTGTCCATGTCAATGACCGACCAATTACTCAACTAAGTGAGACCACTTTTCTTCACCTtgaccaaaattaaattcagtccCACTCCAGACGCTGAAGGTGATCTGGAGGCCGTCAAACAGCTTGAGTTTTCAGCGTGACTCGTGCACCACTGAAACAAGACCGCATTTCAATGAAGCCCAGGCAGAACAGAACGGATGGGGTTGATGAGGGTAGAAGTGTGCTGAGGGGGTGCACCGCCTGGAGCCCGCCTCGACGGGCAAAACATCTCGCCCATAGATCAAAGACCCTCGACATCTCTGAGCCATCCTGAGAGAAAGAAGGGAAGAAAAGCGGTGGAGAGCCAGTGCTTCTAGTGACTGGCACGGTGTAATCCCCCTCGGGCGTAGACAAGCCGGGAGGCAGAAATGGAATGGAGGGGAGAGCGATGACAGGAGGTCCGGCTCCTAATTATCCCAGAAGTTACTGTGTTAGAGAGCCAGGCTTGCCCGGTCATCTGGAGATGTTTTCATCTTGACCCTGACCAGGGGGGGTGGAGAAAGGTTCAGGAGCCTTGCTTAATTGCCAATTTGTGATTCAGTTGAGCCCCATTGCAGACGGGCACTCAAGTAAGAAATGATTTGGCCCCCTTTCATCATCCGCCCCACCCTGTCACCCGCCCAATTTTTTCCTCCCTTCCTGCTTGGGTGTCTCTTTCCAGTTTCTCCTTCTCCCTCTCTTGTCGTCTCCTAACCCATGTTTTGAATCAAAGCTAATGGGTGGTCTGTCGTCTGCGAAGGCAGTTTTTGGTTTCCCAAGCCCTGCTTTTCCGTGCTGAGATTCTAATTGCCAAGAGGGTGACCTCCTCGTTCCTTTAAAATCACACCATGCAGAACGTTTATTTAGGAGGCACAGGGGAGAGGAAGAGGCATGGACACGTGGCCTTGGCCGCCACTTCAAAGCCTGGTCATAGAGAGGAGGAGGGAAGAGGCGATGTTTAAAGATTGTATGGGAGAAACCGAAAAAGCACAACAGTGGCATAACAAGACCAACAGTCCTGATCCACCACACTGCTTTTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064886 lncRNA upstream 57586 36414723 ~ 36415086 (+) True XLOC_032160
TCONS_00062844 lncRNA upstream 187570 36282487 ~ 36285102 (+) True XLOC_032158
TCONS_00062843 lncRNA upstream 187742 36282472 ~ 36284930 (+) False XLOC_032158
TCONS_00062841 lncRNA upstream 187966 36281727 ~ 36284706 (+) False XLOC_032158
TCONS_00064674 lncRNA downstream 122151 36714359 ~ 36714622 (+) True XLOC_032164
TCONS_00062852 lncRNA downstream 215596 36807804 ~ 36819369 (+) False XLOC_032165
TCONS_00062853 lncRNA downstream 224940 36817148 ~ 36818183 (+) True XLOC_032165
TCONS_00064894 lncRNA downstream 591985 37184193 ~ 37247650 (+) False XLOC_032172
TCONS_00064895 lncRNA downstream 591985 37184193 ~ 37250364 (+) False XLOC_032172
TCONS_00062846 mRNA upstream 8977 36459897 ~ 36463695 (+) False XLOC_032161
TCONS_00062847 mRNA upstream 10441 36459962 ~ 36462231 (+) True XLOC_032161
TCONS_00062845 mRNA upstream 80985 36381709 ~ 36391687 (+) True XLOC_032159
TCONS_00062829 mRNA upstream 1105728 35362225 ~ 35366944 (+) False XLOC_032153
TCONS_00062828 mRNA upstream 1105728 35362225 ~ 35366944 (+) True XLOC_032153
TCONS_00062851 mRNA downstream 203017 36795225 ~ 36818959 (+) False XLOC_032165
TCONS_00062854 mRNA downstream 229413 36821621 ~ 36837536 (+) True XLOC_032166
TCONS_00062855 mRNA downstream 247301 36839509 ~ 36844020 (+) False XLOC_032167
TCONS_00062856 mRNA downstream 247422 36839630 ~ 36843887 (+) True XLOC_032167
TCONS_00062857 mRNA downstream 251919 36844127 ~ 36877587 (+) True XLOC_032168
TCONS_00062831 other upstream 677053 35794799 ~ 35795619 (+) True XLOC_032155
TCONS_00062813 other upstream 2530830 33937379 ~ 33941842 (+) True XLOC_032140
TCONS_00062812 other upstream 2538645 33931748 ~ 33934027 (+) False XLOC_032140
TCONS_00062802 other upstream 2922170 33540846 ~ 33550502 (+) True XLOC_032136
TCONS_00062791 other upstream 4056818 32410848 ~ 32415854 (+) False XLOC_032128
TCONS_00062861 other downstream 398362 36990570 ~ 36990684 (+) True XLOC_032171
TCONS_00062862 other downstream 601700 37193908 ~ 37216188 (+) True XLOC_032172
TCONS_00062866 other downstream 742351 37334559 ~ 37334963 (+) True XLOC_032176
TCONS_00062877 other downstream 1123064 37715272 ~ 37717110 (+) False XLOC_032181
TCONS_00062883 other downstream 1495287 38087495 ~ 38087611 (+) True XLOC_032184

Expression Profile

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