RNA id: TCONS_00062852


Basic Information

Item Value
RNA id TCONS_00062852
length 2608
lncRNA type sense_over
GC content 0.42
exon number 4
gene id XLOC_032165
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 36795225 ~ 36819369 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tctctctctctctctctctctatctctatatCTCACCAGCTCACCCTCTCCCTCTCATTTACCCCTCTACCGCCCTTATACTACATTACATTTCCCTCCCTCTCTCATGTTAAGGGGATTCACTTATTTAGAGTCTTGGACAAAGGCTGTGTGTACATATTTTTGGGTCGGCTTAAACCCACACAAACTGGGAGAAATCTAATTATAAATCTATCGGTGAGCCAAGCCGAGCTCATCGTGGAGTCTAGACCTTCAATGAAAGAGGTTCTGTGAAGCTCCAGGACAACAAACGTCAACATCAGGTCCGTCTGAGCCGGTTGGATCATCAGCCTTTTTTTCCAGGACACAGGAGCCTCATAGAGTGCTCCACACTACACGTCTCAAGCTGTCTCTTCGGCTGCTTCCAGCAATTATTATGGACAATGAGGACGATGATGATGGCAACTTTACCAAGTGGATGAGCAGTTATTGGGGCCACGGGGTTGGGGAGGACCACGCCAAAGAGAGGAAGAGGAGCTTCAGGAGGCCGTCCCGCAAGAAAGCTGACCGCCGTGCATCACTGCCTTGCATGTCTCAGCTAGAAGCCATGCAGGCGAATCATCTCCATGTTAACACCATGGCCCCTGTGCCTGTCCATCTAAAGAGCCGTGAGGACAAAGAGGTGCACTCTCACCCTCGCGCCCGCCGTGTGTCTTCAGATGAAAGCAGCCGAAACAAAGTGGGACCTGAATGTCACATCACCACCATCCCTGAGCTCTCTGAGTGCTTAGAGAGGAGGCTGCGTTTCCACAACCACAAGGCAGATGCAGATAGCATATGTCTCATTTGCCATGAAGGACTACGGAAAGAAAGGGGGAGTTTCCAAGAGCTTTACTGTGGCCATCATTTTCATAAAGAGACAAAATGGCCCGAGCATGGCACACGGCCACGTAGTGGGAGTTCTGCACCGGCGTGTGAACGAGGAAAGGAGATACCATTCTGTCCAGGACAAGAGGAGTATCGGTTGCCCCGTCGCCAACTCTCTTTACGTCGACAACGttaattattttcagtgtaacAGTGTACCAATAATCGTTTAGATTTTGTGTTTACCTACACACCATATTTGTTTTAAAGTCCTCAACAGGATCTCTAATTTGCAGGGATTCTTTGTTTTCCtctcttttattcattaattaatcgTTTAATTGTTCAGTAAgtcatttataattaatttttatatgtatattacaataaaaaagtgaTAAGTTTTAGTACTGTCTGCCATTCTTCTGTGTTTAAGTATCCTGAATTTGCAGGTCATATGTCAGGAGTTGCAATTGAGAGGCTATAGCtttttaaatgcacatgctgGAAATTAGCTTGTGGCTAATCACGCTACTGTAATGGAAATCAATACAGGGGCACAAATCTGACACTCATAAGGTCAACAGATCTGTTTTTGAACGTGGAGTTGTCATGCAAGCGTATTCATGTTGTACACTGCATAGTGACATTTAGAGCATTGACAGTGAAATCGACATTGTTTCCTTTAgcatttatgcttttaaaaaaactcgtattttttattcattaaccATTATTCAAGCATTTAAGCAAAATGTAGATTAAAAGAGTTTTATATATCCGTATATATAACACAAACGTCAATTCAGACtgaaagtatatattttgtttagcGTGTCGCTCTTTATCAGCAATGTTTCAACATTTTGTAGCATGTGCAAATGTATGTTAcaattattttcaattttctgTATTACAGCTAGACTCTTAATGACCTTCCATCGTTTGGCTTCCCTCTCTTTCAGTGCATTGAAAAATGGTTTTGGCAGAGACAGTCATGTCCCAGCTGTCGAGTTCATGTGACCATGCCTGCGCCCATCTACTGGTCCTCTGCTCGCATTCATTTTCCCTGACAATGTCTATATTTTTCACCGCATGATCAGTTCTATGTCTGCTTGCTGCATGTGACTCTGTGCACTGATTTAgtgtttatatgtaaataaaaacaaaataagaccATAATCTCTGGGTGAAGACAAGGGCTTAAAACTTTAGCTAGCTGTCTAGCTTTCCTGCATGGTTATACAGCCTGTTGCTTGCATATGCTGCATGAGATTAGACCATTTAGAATATGCATGTTCTTATTAATCTCAAGAGAATTTGTACTTTGTCCTTTACCCTCCTTTTATGATTTACCCCCTCTTTTTTTCTCTATGGCGTTGTGAGTTCGACTAGGCTGAAAAAGGCACATCTGACGccaaccccacccctcacagtaacatcactagctccattgagtgctttgtgtctgagattgcatgtCTGATATTGCAAGTCTCAGCTTACAGCAAGTCCGCAGTCAAATACTCTTGGAAAAATAATGCATGCTAAGTGTCTAACCTCATGAGTCTTTTTGTTTCGTCATCTCTCTCCACTCTGTATTCCACATTTTGCACATCTGCATTACCTGTTAATGTACAAATGCCAAATTCCAGAAAAAAATGTCCAGGGTGTTATAATAATCTAAAGTGTAAATGATTGTTTCAGAGTTATATATGTTGTTTGTACCAAATTCATtcatgtaattaaatatttagagGTT

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064674 lncRNA upstream 93182 36714359 ~ 36714622 (+) True XLOC_032164
TCONS_00064889 lncRNA upstream 189306 36472621 ~ 36618498 (+) False XLOC_032162
TCONS_00064894 lncRNA downstream 364824 37184193 ~ 37247650 (+) False XLOC_032172
TCONS_00064895 lncRNA downstream 364824 37184193 ~ 37250364 (+) False XLOC_032172
TCONS_00064896 lncRNA downstream 364830 37184199 ~ 37217476 (+) False XLOC_032172
TCONS_00064897 lncRNA downstream 364938 37184307 ~ 37247650 (+) False XLOC_032172
TCONS_00064898 lncRNA downstream 364966 37184335 ~ 37247650 (+) False XLOC_032172
TCONS_00062846 mRNA upstream 344109 36459897 ~ 36463695 (+) False XLOC_032161
TCONS_00062847 mRNA upstream 345573 36459962 ~ 36462231 (+) True XLOC_032161
TCONS_00062845 mRNA upstream 416117 36381709 ~ 36391687 (+) True XLOC_032159
TCONS_00062829 mRNA upstream 1440860 35362225 ~ 35366944 (+) False XLOC_032153
TCONS_00062828 mRNA upstream 1440860 35362225 ~ 35366944 (+) True XLOC_032153
TCONS_00062854 mRNA downstream 2252 36821621 ~ 36837536 (+) True XLOC_032166
TCONS_00062855 mRNA downstream 20140 36839509 ~ 36844020 (+) False XLOC_032167
TCONS_00062856 mRNA downstream 20261 36839630 ~ 36843887 (+) True XLOC_032167
TCONS_00062857 mRNA downstream 24758 36844127 ~ 36877587 (+) True XLOC_032168
TCONS_00062858 mRNA downstream 58599 36877968 ~ 36896993 (+) False XLOC_032169
TCONS_00062849 other upstream 265702 36472721 ~ 36542102 (+) True XLOC_032162
TCONS_00062850 other upstream 295874 36511812 ~ 36511930 (+) True XLOC_032163
TCONS_00062848 other upstream 334856 36465347 ~ 36472948 (+) False XLOC_032162
TCONS_00062831 other upstream 1012185 35794799 ~ 35795619 (+) True XLOC_032155
TCONS_00062813 other upstream 2865962 33937379 ~ 33941842 (+) True XLOC_032140
TCONS_00062861 other downstream 171201 36990570 ~ 36990684 (+) True XLOC_032171
TCONS_00062862 other downstream 374539 37193908 ~ 37216188 (+) True XLOC_032172
TCONS_00062866 other downstream 515190 37334559 ~ 37334963 (+) True XLOC_032176
TCONS_00062877 other downstream 895903 37715272 ~ 37717110 (+) False XLOC_032181
TCONS_00062883 other downstream 1268126 38087495 ~ 38087611 (+) True XLOC_032184

Expression Profile

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