RNA id: TCONS_00062853


Basic Information

Item Value
RNA id TCONS_00062853
length 746
lncRNA type retained_intron
GC content 0.38
exon number 2
gene id XLOC_032165
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 36795225 ~ 36819369 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtatttctggcAACCAGAAGTGCCAGTTCTGTAAATTATAcagcaatttttttacagtgcactgtagACAAAATGCATGAATATCCTTATACTAATGGATGATTTTGGCTTGTGTATTTGTAGGCAGATGCAGATAGCATATGTCTCATTTGCCATGAAGGACTACGGAAAGAAAGGGGGAGTTTCCAAGAGCTTTACTGTGGCCATCATTTTCATAAAGAGACAAAATGGCCCGAGCATGGCACACGGCCACGTAGTGGGAGTTCTGCACCGGCGTGTGAACGAGGAAAGGAGATACCATTCTGTCCAGGACAAGAGGAGTATCGGTTGCCCCGTCGCCAACTCTCTTTACGTCGACAACGttaattattttcagtgtaacAGTGTACCAATAATCGTTTAGATTTTGTGTTTACCTACACACCATATTTGTTTTAAAGTCCTCAACAGGATCTCTAATTTGCAGGGATTCTTTGTTTTCCtctcttttattcattaattaatcgTTTAATTGTTCAGTAAgtcatttataattaatttttatatgtatattacaataaaaaagtgaTAAGTTTTAGTACTGTCTGCCATTCTTCTGTGTTTAAGTATCCTGAATTTGCAGGTCATATGTCAGGAGTTGCAATTGAGAGGCTATAGCtttttaaatgcacatgctgGAAATTAGCTTGTGGCTAATCACGCTACTGTAATGGAAATCAATACAGGGGCACAAATCTGACACTCAT

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141222-33 Predicted to enable metal ion binding activity. Orthologous to human LNP1 (leukemia NUP98 fusion partner 1).

Ensembl:

ensembl_id ENSDART00000172342

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064674 lncRNA upstream 102526 36714359 ~ 36714622 (+) True XLOC_032164
TCONS_00064893 lncRNA upstream 198650 36472672 ~ 36618498 (+) False XLOC_032162
TCONS_00064892 lncRNA upstream 224940 36472672 ~ 36592208 (+) False XLOC_032162
TCONS_00064891 lncRNA upstream 236870 36472660 ~ 36580278 (+) False XLOC_032162
TCONS_00064890 lncRNA upstream 243677 36472629 ~ 36573471 (+) False XLOC_032162
TCONS_00064894 lncRNA downstream 366010 37184193 ~ 37247650 (+) False XLOC_032172
TCONS_00064895 lncRNA downstream 366010 37184193 ~ 37250364 (+) False XLOC_032172
TCONS_00064896 lncRNA downstream 366016 37184199 ~ 37217476 (+) False XLOC_032172
TCONS_00064897 lncRNA downstream 366124 37184307 ~ 37247650 (+) False XLOC_032172
TCONS_00064898 lncRNA downstream 366152 37184335 ~ 37247650 (+) False XLOC_032172
TCONS_00062846 mRNA upstream 353453 36459897 ~ 36463695 (+) False XLOC_032161
TCONS_00062847 mRNA upstream 354917 36459962 ~ 36462231 (+) True XLOC_032161
TCONS_00062845 mRNA upstream 425461 36381709 ~ 36391687 (+) True XLOC_032159
TCONS_00062829 mRNA upstream 1450204 35362225 ~ 35366944 (+) False XLOC_032153
TCONS_00062828 mRNA upstream 1450204 35362225 ~ 35366944 (+) True XLOC_032153
TCONS_00062854 mRNA downstream 3438 36821621 ~ 36837536 (+) True XLOC_032166
TCONS_00062855 mRNA downstream 21326 36839509 ~ 36844020 (+) False XLOC_032167
TCONS_00062856 mRNA downstream 21447 36839630 ~ 36843887 (+) True XLOC_032167
TCONS_00062857 mRNA downstream 25944 36844127 ~ 36877587 (+) True XLOC_032168
TCONS_00062858 mRNA downstream 59785 36877968 ~ 36896993 (+) False XLOC_032169
TCONS_00062849 other upstream 275046 36472721 ~ 36542102 (+) True XLOC_032162
TCONS_00062850 other upstream 305218 36511812 ~ 36511930 (+) True XLOC_032163
TCONS_00062848 other upstream 344200 36465347 ~ 36472948 (+) False XLOC_032162
TCONS_00062831 other upstream 1021529 35794799 ~ 35795619 (+) True XLOC_032155
TCONS_00062813 other upstream 2875306 33937379 ~ 33941842 (+) True XLOC_032140
TCONS_00062861 other downstream 172387 36990570 ~ 36990684 (+) True XLOC_032171
TCONS_00062862 other downstream 375725 37193908 ~ 37216188 (+) True XLOC_032172
TCONS_00062866 other downstream 516376 37334559 ~ 37334963 (+) True XLOC_032176
TCONS_00062877 other downstream 897089 37715272 ~ 37717110 (+) False XLOC_032181
TCONS_00062883 other downstream 1269312 38087495 ~ 38087611 (+) True XLOC_032184

Expression Profile

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