RNA id: TCONS_00062858


Basic Information

Item Value
RNA id TCONS_00062858
length 1765
RNA type mRNA
GC content 0.45
exon number 10
gene id XLOC_032169
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 36877968 ~ 36901130 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGGCGGAGTTTAGCGTGTGACTGCAGGTGTTGAGAAGCTTTCAAACAGACGCTTCTATACAAGAAGTAATGTCCCGAGCGGTTTTGTACACTATTGTTAGACCTTGACCGGAGTTAAATCCTCAAGCGACTAAATCGGTCTACAGATTTGTGTGCTGGCTGGGGATATGAAATGGCTCCAGCTCTTCTATATTAAATGCAAGGATGATGATTTCCCTGCATAGTTTACCAAATAGGTATACTTCTCCATTTGCCCACTACGGTCAACAATCCCTCAACTTTCCAGAAGAGAACGACGAGACTATGGATAAAATCAATACTAAGGATTCTGTCTGTGACTCAGACTTCACAGATTCTCAACTTTCTCTTGCCGGATGTTGCATGTCTGGCAGTGAATCTTCTCTCAGCACTCAGGCTGACTTCGTAAATATCTGCAGTGACAGAAAGACCAACTACAGACCCACACAGACCAACTACAGCCCTTACCAGCCTCCATTAGGTCTACCCTCTGGGTACAATCCCCAGACGCCTTTTCCCAGCCAGACAGAAGCATGTCTGAGCACCTTCGAGCCGCACAAAGGAGAGCTGCACTCGGTGAGCAGCAGTTTGGTCGAATACCCTAGTGGAAACCCCCCCTCTTGTTTGGTGTCTGGAAATTACCCCAATTATCCTGGCGATTCTTGCTACTCCTGCTCTCCAGACAGGCACAGTGTTGGAGAGGGGAGTCTCGAACAGCCGCGCTCATTGCACTCTATTCCTACTGCGTTCACGCCTCACAGTTACTGCCTGCCTCAGCACCTCCACGGACCGCCCTGTCTCAGTCATTACCCTGCAGATATGTGTCAGATGGATCAAGGCTCTCATTACAGGCCGCATTACCACATGCATCATTGGGCTTCTCGCCCTGAAAACAGCAGACAGTCAGCTTCAGAGTTCACTCATAGTGGCTACACCTCTTCTCACCATGGCGCTAAACTAACCCCAAGTACAGCTCCTCTTTCCCTGGAGCAGAGGAAGGTGTTTGTTACTTACGAAGCAGACAGCGAAAAACATGTCAAAGAGATCATCAACTTTGTCGCCCTGCTGAGACACAATGGCTTCTACACTCACATTGACATGTTTGAGCAGCAGTTCAAGAGCATAAGCAAGATTGACTTCATGGAGAGATACATCAGCGAAAAAGACTATCTGATTATCATAGTCATTAGCCCAAAGTACCACGAGATTGTGACCAATGCTTCCTTTTGCATGGAAAACGATGAAACGCTCAACACTGTCTACATACACAAACAGTTACAAAACGAATTCATTCAGAATGGAGCCAGGAATTACAGATTCATCCCCATCTTGTTTCCCGGTGCCAAAAAGtgCCACGTCCCTTCATGGCTTCAAGGCACGCAGATCTTCACCTGGCCCAGGGATCGTGATGATATTCTCCGTCGACTCATGCGCGTTGAGAAGTACAACCCTCCACCTATAGGAGAGCTGCCCACTATTGTCTCCATTCCCATTTAGCTCATTATATTTGCTTTGGAAACCATGATGATATGTCAGTTATCAACAGCCTTATacttcattttaaattagtttgctTCTTTGAACTATTAGATCTGGATTTAACATGTTAAAAGGCATAAAGCAACtgacatacattgctcagcataaatgagtacaccccatgtTTGTATATATTAGAAAATAGGCAATATACTGTATTTTGGTTGTatttgaacaaaactgatttaataaacatttatattcatca

Function

GO:

id name namespace
GO:0006959 humoral immune response biological_process
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-110919-1 Predicted to be involved in humoral immune response and positive regulation of I-kappaB kinase/NF-kappaB signaling. Human ortholog(s) of this gene implicated in chronic mucocutaneous candidiasis and psoriasis 13. Orthologous to human TRAF3IP2 (TRAF3 interacting protein 2).

Ensembl:

ensembl_id ENSDART00000155187

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062852 lncRNA upstream 58599 36807804 ~ 36819369 (+) False XLOC_032165
TCONS_00062853 lncRNA upstream 59785 36817148 ~ 36818183 (+) True XLOC_032165
TCONS_00064674 lncRNA upstream 163346 36714359 ~ 36714622 (+) True XLOC_032164
TCONS_00064893 lncRNA upstream 259470 36472672 ~ 36618498 (+) False XLOC_032162
TCONS_00064892 lncRNA upstream 285760 36472672 ~ 36592208 (+) False XLOC_032162
TCONS_00064894 lncRNA downstream 287200 37184193 ~ 37247650 (+) False XLOC_032172
TCONS_00064895 lncRNA downstream 287200 37184193 ~ 37250364 (+) False XLOC_032172
TCONS_00064896 lncRNA downstream 287206 37184199 ~ 37217476 (+) False XLOC_032172
TCONS_00064897 lncRNA downstream 287314 37184307 ~ 37247650 (+) False XLOC_032172
TCONS_00064898 lncRNA downstream 287342 37184335 ~ 37247650 (+) False XLOC_032172
TCONS_00062857 mRNA upstream 381 36844127 ~ 36877587 (+) True XLOC_032168
TCONS_00062855 mRNA upstream 33948 36839509 ~ 36844020 (+) False XLOC_032167
TCONS_00062856 mRNA upstream 34081 36839630 ~ 36843887 (+) True XLOC_032167
TCONS_00062854 mRNA upstream 40432 36821621 ~ 36837536 (+) True XLOC_032166
TCONS_00062851 mRNA upstream 59009 36795225 ~ 36818959 (+) False XLOC_032165
TCONS_00062860 mRNA downstream 45973 36942966 ~ 37164417 (+) True XLOC_032170
TCONS_00062863 mRNA downstream 404348 37301341 ~ 37307487 (+) False XLOC_032173
TCONS_00062865 mRNA downstream 411723 37308716 ~ 37311049 (+) True XLOC_032174
TCONS_00062867 mRNA downstream 544796 37441789 ~ 37454910 (+) True XLOC_032177
TCONS_00062870 mRNA downstream 632390 37529383 ~ 37600648 (+) False XLOC_032179
TCONS_00062849 other upstream 335866 36472721 ~ 36542102 (+) True XLOC_032162
TCONS_00062850 other upstream 366038 36511812 ~ 36511930 (+) True XLOC_032163
TCONS_00062848 other upstream 405020 36465347 ~ 36472948 (+) False XLOC_032162
TCONS_00062831 other upstream 1082349 35794799 ~ 35795619 (+) True XLOC_032155
TCONS_00062813 other upstream 2936126 33937379 ~ 33941842 (+) True XLOC_032140
TCONS_00062861 other downstream 93577 36990570 ~ 36990684 (+) True XLOC_032171
TCONS_00062862 other downstream 296915 37193908 ~ 37216188 (+) True XLOC_032172
TCONS_00062866 other downstream 437566 37334559 ~ 37334963 (+) True XLOC_032176
TCONS_00062877 other downstream 818279 37715272 ~ 37717110 (+) False XLOC_032181
TCONS_00062883 other downstream 1190502 38087495 ~ 38087611 (+) True XLOC_032184

Expression Profile

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