RNA id: TCONS_00062862


Basic Information

Item Value
RNA id TCONS_00062862
length 524
RNA type processed_transcript
GC content 0.45
exon number 3
gene id XLOC_032172
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 37184193 ~ 37250364 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTATCGTACTATGGTAGTTCGGCCGCGAGTTACGtctttgtttgggaaacgcaccctagCGCGATTTATGTTTATACTAAGAGGAAAGCATACATAAATAAGCGTCCCTCTAAGCAGTGTGCACGACATCTGGATGTCCGTTTACAATATATAACTGCAAAGGTATTTCCAACTTCTCTTTAATTTTAAAAGACTGAATATGTACTTCAAAAGTGTTGCGTATGAATCAGCCACCAAGTGCAAGTCTAAACCAAAGCAAATCCCACAGCTCGCGTCAAGCAAGGAGTGAAGCAGCAGGATTCCACTGAAGATTAAGAAATGATCATGAAAGGGTTATCTGCAGTTGAGGGAATGATGTGATGTTGTGGCggtacacacacacccacatatgGATCCCCATACGGAGGTCAGCGGCTGGCCAGCAGGCAGCACACAccgcACAATAAAACTGTGAACAGGACCGGTGCATACAGAAAAGAGTTTAGTGCAGGCTCCGTCACACAGCAGACATTGATTTGTGGTG

Function

GO:

id name namespace
GO:0072350 tricarboxylic acid metabolic process biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0006099 tricarboxylic acid cycle biological_process
GO:0006101 citrate metabolic process biological_process
GO:0009060 aerobic respiration biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0003015 heart process biological_process
GO:0061061 muscle structure development biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0060047 heart contraction biological_process
GO:0045333 cellular respiration biological_process
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000154837

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062852 lncRNA upstream 374539 36807804 ~ 36819369 (+) False XLOC_032165
TCONS_00062853 lncRNA upstream 375725 36817148 ~ 36818183 (+) True XLOC_032165
TCONS_00064674 lncRNA upstream 479286 36714359 ~ 36714622 (+) True XLOC_032164
TCONS_00064893 lncRNA upstream 575410 36472672 ~ 36618498 (+) False XLOC_032162
TCONS_00064892 lncRNA upstream 601700 36472672 ~ 36592208 (+) False XLOC_032162
TCONS_00062864 lncRNA downstream 89150 37305338 ~ 37306771 (+) True XLOC_032173
TCONS_00064903 lncRNA downstream 98149 37314337 ~ 37315909 (+) True XLOC_032175
TCONS_00064904 lncRNA downstream 253928 37470116 ~ 37476101 (+) False XLOC_032178
TCONS_00062868 lncRNA downstream 258789 37474977 ~ 37476101 (+) True XLOC_032178
TCONS_00062878 lncRNA downstream 509121 37725309 ~ 37725925 (+) True XLOC_032181
TCONS_00062860 mRNA upstream 29491 36942966 ~ 37164417 (+) True XLOC_032170
TCONS_00062859 mRNA upstream 292778 36878815 ~ 36901130 (+) True XLOC_032169
TCONS_00062858 mRNA upstream 296915 36877968 ~ 36896993 (+) False XLOC_032169
TCONS_00062857 mRNA upstream 316321 36844127 ~ 36877587 (+) True XLOC_032168
TCONS_00062855 mRNA upstream 349888 36839509 ~ 36844020 (+) False XLOC_032167
TCONS_00062863 mRNA downstream 85153 37301341 ~ 37307487 (+) False XLOC_032173
TCONS_00062865 mRNA downstream 92528 37308716 ~ 37311049 (+) True XLOC_032174
TCONS_00062867 mRNA downstream 225601 37441789 ~ 37454910 (+) True XLOC_032177
TCONS_00062870 mRNA downstream 313195 37529383 ~ 37600648 (+) False XLOC_032179
TCONS_00062869 mRNA downstream 313195 37529383 ~ 37600648 (+) False XLOC_032179
TCONS_00062861 other upstream 203224 36990570 ~ 36990684 (+) True XLOC_032171
TCONS_00062849 other upstream 651806 36472721 ~ 36542102 (+) True XLOC_032162
TCONS_00062850 other upstream 681978 36511812 ~ 36511930 (+) True XLOC_032163
TCONS_00062848 other upstream 720960 36465347 ~ 36472948 (+) False XLOC_032162
TCONS_00062831 other upstream 1398289 35794799 ~ 35795619 (+) True XLOC_032155
TCONS_00062866 other downstream 118371 37334559 ~ 37334963 (+) True XLOC_032176
TCONS_00062877 other downstream 499084 37715272 ~ 37717110 (+) False XLOC_032181
TCONS_00062883 other downstream 871307 38087495 ~ 38087611 (+) True XLOC_032184
TCONS_00062884 other downstream 1160903 38377091 ~ 38377211 (+) True XLOC_032186
TCONS_00062893 other downstream 1557230 38773418 ~ 38782158 (+) True XLOC_032190

Expression Profile

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