RNA id: TCONS_00062863


Basic Information

Item Value
RNA id TCONS_00062863
length 2087
RNA type mRNA
GC content 0.39
exon number 10
gene id XLOC_032173
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 37301341 ~ 37307487 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCTCAAATTCCATATTTGCCTAGATAGGGGGCCATTCAGATTTTGAAACACAGCCCATTTATGTCTTTCGGTGTAGCAAACGTGTTCTTTCCTCGTGGTTTTACACTCTGAAAAGTATTGCATTTGTtgtagtttttagttttaaactCGATAGTATTGGTGTAATcatctatattaatattttacggCGTTCTTTGTTTCTCTGGCGGATTCTGAAAGACAGTTGTTAGGACATAACTTAAAGATGTCGGGGAAGAGTTTTCGCGTTAGCGACGGAGACTGGATTTGTCCTGATAAAAAGTGTGGAAATGTCAACTTTGCAAGAAGAACGAGTTGTAATCGATGTGGAAGGGAGAAGACGACTGAAGCAAAGATGATGAAAGCAGGGGGGACAGAAATAGGAAAGACCCTGGCAGAGAAGAGCAGGGGTCTCTTCAGTGCAAACGACTGGCAGTGCAAAACTTGTGGCAATGTAAACTGGGCCAGAAGGTCAGAGTGCAACATGTGTAACACTCCTAAATATGCCAAACTGGAGGAAAGGACAGGATACGGCGGAGGGTTTAACGAAAGAGAAAATTTAGTCTACAATGAGCGAGAGGAGTCTGATGGTGAATATGAtgagTTTGGGCGCATAAAAAAGAAGTTTCGTGGGAAAACCAAGAAGGATAGTGATAAAAAGGAGGAACCAAAAAAAGTTGATCAAGACGATGAGGAAGAGGATGACGATGATGAAGATGGAGATCTTTCCAAATACAAACTTGATgATGACGACGaggacgatgatgatgatgatgatgatgaagatgatgcaGATTTGTCCAAGTATGATTTGGATGACGGTGACGAGAAGAAAGGGAGTCATTCGGGATCCTCACGCTCCTCTTCACGCTCGTCCAGTTCAAGTTCCCGGTCTAGGTCCAGATCCCGCTCCAGAAGCTCATCCAGCTCCAGATCTCGCTCTCGATCCAGGTCCAAATCCAGATCCAGCTCCAGATCAGGAAAGGGTTCTGCATCCTCAAAGAAGAGGTCTCGCTCTCCATCGTCATCACCTGAAGGAGGCCAGAAGAGGAGTCGTTCCAGATCCTCCTCTGGTGGCCGCAAAAAAAGACGTGCACGATCTCACTCGTCTGAAAGGCGCAGAGGCTCATCTGGATCATCTCACTCTGGCTCAAGCTCAAAACAGAATTGATTAACAAAAGAAACAGATCTTTCtaaaacagcatgttttttttcctccaacTCCAGTTTTTGTGCTATTGCAGCTACATAACTGTTTGAATTCACACTGATTTTCATATAAAGCAAACTTGTGCACCTGTTCACCTAACCTCTTAAGttttctgctaaaaaaaaaatctagccaAATCCCTTAATAGTATATCTCAAGGTGTAATGTCTGTAGTTTAagtgggtttacagagaaaccaTTCAGTGACTGTATAAATGGCACATATCTTCTGACATTTACCTTTTGATATGACATTATGCAAATTATATTGCAGAAGTAGATTTATCCATCAATTGTCAGATATTTCTGCAGTCAGTATAACTAGTTCATTCACAAAACATTtgatgatttgaaaaaaaaaaaacatttctccaGATGTTGGTTTTATGGCTAACATTAAAATACTGAAGGCATCAAATTCAGCAATGCCAGAATCTGAAtgatctagaaaaaaaaaactcttcttaAAGCTTAACATTGTCTTTAGTAATTGTGTGCATAAAAGGTaagtatgttttttgttttagttttttaagacATGGAGAATTTTCTTTTGGCAGGACAGAAATGCATTTTTCGTTCATTGTGTGTATGTCCTATTTTGTGGTCTCTTTTTGTGCAAGTTTAATTTTTAAGCATAACTGTGGCATTACTGAATGGTTTAAATTGATAAACACAAGGTACAATTAAAGTAAATtactttttctcttctttttttccccctctgtGGTCAAATCAAATTTGGAACATGTAATCTGAATTATTTTACCACTCGTTTCTGAcatgaaatatgaaaatgttttactgttaaaatgaCATGAGTGTAACCAACATGAATAAACACTTGTTAATCTAAAA

Function

GO:

id name namespace
GO:0042742 defense response to bacterium biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0001530 lipopolysaccharide binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0030882 lipid antigen binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2743 Enables lipid antigen binding activity and lipopolysaccharide binding activity. Acts upstream of or within defense response to bacterium. Predicted to be located in nucleus. Is expressed in several structures, including anterior neural tube; blastoderm; blastodisc; integument; and pleuroperitoneal region. Orthologous to human ZRANB2 (zinc finger RANBP2-type containing 2).

Ensembl:

ensembl_id ENSDART00000104180

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064895 lncRNA upstream 50977 37184193 ~ 37250364 (+) False XLOC_032172
TCONS_00064899 lncRNA upstream 50977 37184335 ~ 37250364 (+) False XLOC_032172
TCONS_00064894 lncRNA upstream 53691 37184193 ~ 37247650 (+) False XLOC_032172
TCONS_00064897 lncRNA upstream 53691 37184307 ~ 37247650 (+) False XLOC_032172
TCONS_00064898 lncRNA upstream 53691 37184335 ~ 37247650 (+) False XLOC_032172
TCONS_00064903 lncRNA downstream 6850 37314337 ~ 37315909 (+) True XLOC_032175
TCONS_00064904 lncRNA downstream 162629 37470116 ~ 37476101 (+) False XLOC_032178
TCONS_00062868 lncRNA downstream 167490 37474977 ~ 37476101 (+) True XLOC_032178
TCONS_00062878 lncRNA downstream 417822 37725309 ~ 37725925 (+) True XLOC_032181
TCONS_00064905 lncRNA downstream 1051194 38358681 ~ 38360443 (+) True XLOC_032185
TCONS_00062860 mRNA upstream 136924 36942966 ~ 37164417 (+) True XLOC_032170
TCONS_00062859 mRNA upstream 400211 36878815 ~ 36901130 (+) True XLOC_032169
TCONS_00062858 mRNA upstream 404348 36877968 ~ 36896993 (+) False XLOC_032169
TCONS_00062857 mRNA upstream 423754 36844127 ~ 36877587 (+) True XLOC_032168
TCONS_00062855 mRNA upstream 457321 36839509 ~ 36844020 (+) False XLOC_032167
TCONS_00062865 mRNA downstream 1229 37308716 ~ 37311049 (+) True XLOC_032174
TCONS_00062867 mRNA downstream 134302 37441789 ~ 37454910 (+) True XLOC_032177
TCONS_00062870 mRNA downstream 221896 37529383 ~ 37600648 (+) False XLOC_032179
TCONS_00062869 mRNA downstream 221896 37529383 ~ 37600648 (+) False XLOC_032179
TCONS_00062871 mRNA downstream 221912 37529399 ~ 37530820 (+) True XLOC_032179
TCONS_00062862 other upstream 85153 37193908 ~ 37216188 (+) True XLOC_032172
TCONS_00062861 other upstream 310657 36990570 ~ 36990684 (+) True XLOC_032171
TCONS_00062849 other upstream 759239 36472721 ~ 36542102 (+) True XLOC_032162
TCONS_00062850 other upstream 789411 36511812 ~ 36511930 (+) True XLOC_032163
TCONS_00062848 other upstream 828393 36465347 ~ 36472948 (+) False XLOC_032162
TCONS_00062866 other downstream 27072 37334559 ~ 37334963 (+) True XLOC_032176
TCONS_00062877 other downstream 407785 37715272 ~ 37717110 (+) False XLOC_032181
TCONS_00062883 other downstream 780008 38087495 ~ 38087611 (+) True XLOC_032184
TCONS_00062884 other downstream 1069604 38377091 ~ 38377211 (+) True XLOC_032186
TCONS_00062893 other downstream 1465931 38773418 ~ 38782158 (+) True XLOC_032190

Expression Profile

//