RNA id: TCONS_00062872


Basic Information

Item Value
RNA id TCONS_00062872
length 3831
RNA type mRNA
GC content 0.46
exon number 24
gene id XLOC_032180
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 37623693 ~ 37652517 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAATGCACCGCAGAAGAAGAGTCTGAAGTCATGGAGGCGGCAACGGGGGAAATCGTAAAACATCTAATGCTCGTACTAAAATATTAAGATTGAAATTCAGTCCTCAATTTGTCCTTCGTATTATGTTCGTGAGATAGACGACAAATTTTTTGCTTTATCTGTAACATGTAGCATACGTCGTTGTGATGGGTTTCTTGTTTTGCTAACCGAAGCTGTTGACAACGACTCGCCCCTGTCAGCATCACAACTAGAAAGCAGGTAGTCTTAACTGATCAGAATGGCTCACTGGAGTAGGTTCGAAAAGGAGCTTGAGCTCGAGACCAAGAGACTCATCTCACATTTCACAGCCATTCAGGATGAGGAAGATCAAAACTTTCAAATGGCACTGAAGTTTACCTGGTCTAATTTTAAGTTTCATCGTTTCCTTGAAGCAAACAGACATAATGTGCAGCGCTCCATTAATGGTATTCATGAGAAACTCATGGTTCACTCTGACTTGAGTAAAGCGGAGAGTTGGACACGACTCACTGAAGAGTTTCTCACTTCGCCTCTTCCTAATACTGATGGAACAAAGACCGACATCCATTATGGCATCCTGGCTTTGTTACTTCACCTGTCTGACTCTCCATCCAATACAAACTACTGTGAAAGACCCAGACTGAAAGAGACAGagAAAGAAGACACGTTTGACTGGGCCAAGTACCTCATGGAAGGAGAAGATTTTGATCCTGGACCTTTTCCAGACACTCCAGAGTGGTCTGAGGAGGAAAGCGAAGAAGACGACAGCCAGCAGCCCTTGAGCAGAGAGGATTCTGGGATACAGGTGGACAGAACGCCGCAGGAGGACCACGAGCAGAACGACAAGACCGTTCAAGTCACCTGGACCGTTGGTGAGCCGGACTCCAGGGCTTGGTTGGAGCAGCATATTGTCACTTCTTATTGGGTTCCCAACTCTCCCCGTTTTCCACACAGTCTTCACCTGCACTCCAACCTCTACAACGTTTGGGATCAGCACTTGTATAACACTGGGCCTCTCTACCTGCCTGAGGAGAAATCTTTTGTTACTGAGACACAAGTAATTCGAGAAACTCTTTgGCTTTTCTCTGGCGTGAagaaacttttcattttccagcACAATGACGGCAAGGTGACTGTAAGGAATGATGTGGTGGTCACGCATCTAACGAATAACTGTCTTCACTCTGTACTGGAGCACATAGCGGCCTATGGGCAGGCTGTTTCCCGCCTGCAAAAGTTTATTGATGAAGTGACAGGCCACAGCGCAGAACCCTGTCCTCCAGGTCTCAATTCTTCCTCGTCATCCTCCAAGAAGAGTTCCGAGCCTCCTTTTAGGACCTACCAAGCATTTGTTTGGGCCCTTTATAAATACTTCACCAGCTTTAAAGAAGAGCTCAATGCTATCGAGAAAGACATCATTGCCAaagATGAGACTGTGACTCTGTCTTCTGTGCTGGAACGGTTGAGTCCTCATCTGGCTCAGATCACAATGCTCCACAGGGTTTTCTGCACAGGAGTGGCTGAGGTGCCGCCCGGAACGCCCAATGTTTTACGAGCCTCGCACTTACTCAACACCCTCTACAAGGCCATCATTGAGTATGACAGTGTGGGTGAAGCCTCTGAGCAGTCTGTGGCACTTCTTTTCTCTCTCTGGGTAGAAACGGTGAGGCCATATCTTGAGATTGTTGATGAATGGATTGTTCATGGTCACTTATTTGACCCTGCCAAGGAGTTCATCATTCAGAGAAACAAGGATGTACCGGTAAACCACAGGGACTTCTGGTATGCCACTTACACTCTGTATAGCGTGTCTGAAATGGTGGAGAGTGAGGAGAGGCTCAGCGATGCAGCCAGTGGAAGCTCAGGTGGAGAACAGACATCCAGCAGCAGACAACACACCATGGTGTCCTTCCTCAAGCCAGTGCTCAAGCAGATCATCATGGCTGGAAAATCCATGCAGCTCCTCAAGAACCTGGACTGCAAGGAGACTGAACAATCTGATGGCTCCTCTagagATGCTGAGAGAAAAAGTCTGTACACGCTCTTCTTGGAGTCGGTGCAGACTCGTCTTCGGCGTGGAGAAGAGTCACCCACAAATACAGTTACCGAGCAACAGGCCACTAAGAAGAGCCTGATCAAAATGCAGTCCATCGTGGCACGTCATCTGGAGCTGGATGACATCCATGACCCCCTGCTGGCCATTAATTTTGCAAGGCTTTATTTAGAGCAGAATGACTTTCATGAGAAATTCTCTGGTGGCAGTGTGATTCTGGATCGCTCCTCTGAGTCTGTGACATGCCAGACGTTTGAGCTCACACTTCGCTCCTGTCTGTATCCACATATTGAGAGGAGATACGTTGAATGCTGTGGGAACCTCATGAGAACCCTGAAGAAAGACTACAGGCTACTGGGGTACTTGCAGGCCATGAGAAACTACTTCCTGCTGGAGGCTGGGGATACCATGTATGATTTCTACACAGCCATTTTCGACAAAGTTCTGGAGAAGGAGAGCTGGCAGCAGCTGGCGTTCCTCAACGTGCAGCTTCAGGAGTCTGTCGGACAGCGCCATCCTGAGGACAGTCATCGGTTGTCCATCTTTCTTGAAACTATCGATCCTGCGAGGAAAAAGCAGCCAGTGAATAACCTTGATGGTCTTACGCTGAGTTATAAGGTTCCATGGCCTGTGGATATTGTCATTAGTTCAGAGTGTCAGAAAATCTACAATCAAGTCTTCCTGTTGCTACTTCAGATCAAATGGGCCAAGTATAGTCTGGACACATTACGATTTAGTGATTTGACAGTAGCTGCTAAGAGGAAAGAAGGAGGCCAGCCTGAGGAAAACACAGCCAAAGAGTCCATAAACCAGCAGATTCACAGGATGTTTCTCCTGAGGGTCAAACTCATGCACTTTGTCAACAGCCTGCACAATTACATTATGACAAGGATATTGCATAGTACGGGTCTAGAGTTTCAACACCAAGTACAGGAGGCAAAAGACCTGGACCAGCTCATTAAAATCCACTACAGATACTTGTCCACCATTCATGACCGATGTCTGCTCAGAGAGAAAGTCAGTTTTGTCAAGGAGGCCATCATGAAAGTGCTGAATTTAGTTCTCATCTTCTCTGACAGATGGCAGGCTGGTTTTGGGGCCTGGaaAATCGAGTCGATTGACAAAATGGAGTCGGATTTTAAAAACTGTCACATGTTTCTGGTGACCATATTAAACAAGGCTGTTTGCAGAGGCTCATTTCCTCATCtGGAGTCCTTGGCGATGTCACTAATGGCTGGATTTGAACAGTGTTAACCGATCGAACATGCTGTCAATCCAGAGCAGCGAACACAAGACAGATTATTTATTGTACTGCTGCATGAAGGCTACTGTACTGTTTCTCTTCATTTCTGCCAGACGTCTGACGCAAAATCACAATAGCACTCCACTGGTACAGAAGTAGCACTTTGTTTGTGTGAACAGTGAATCTTGTGTTTCGTCGTCTACTTTGTCTATAAAACAGTTGCTGCATCAAGATACTCAGTGTTACAGGTGAAAGTGTCAGATGTGAATATTAAGTGTCCTGTACGTGTAGCGGATATATGAAGCGCACATGCCAGTAATCCCAATTATGTATATAACATGCAATAGGCACGCTCGAATTTAAGTAGTGTACATAACATAAGCTAAAATCCAAAATTGTAGACTACATTTGTATGCAGTTCaagcttatatttatatatgttgtgGTTGCGTAAAGTCATTTTTCATTGTGATGAATGGGCTactgcatattaaaataattttcatgactttaataa

Function

GO:

id name namespace
GO:0051415 microtubule nucleation by interphase microtubule organizing center biological_process
GO:0051225 spindle assembly biological_process
GO:0007020 microtubule nucleation biological_process
GO:0031122 cytoplasmic microtubule organization biological_process
GO:0051321 meiotic cell cycle biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005813 centrosome cellular_component
GO:0005815 microtubule organizing center cellular_component
GO:0000922 spindle pole cellular_component
GO:0000923 equatorial microtubule organizing center cellular_component
GO:0000930 gamma-tubulin complex cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005874 microtubule cellular_component
GO:0008274 gamma-tubulin ring complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043015 gamma-tubulin binding molecular_function
GO:0051011 microtubule minus-end binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-050522-344 Predicted to enable gamma-tubulin binding activity. Predicted to contribute to microtubule minus-end binding activity. Predicted to be involved in meiotic cell cycle; microtubule cytoskeleton organization; and mitotic cell cycle. Predicted to act upstream of or within microtubule cytoskeleton organization. Predicted to be located in cytoplasm and microtubule cytoskeleton. Predicted to be part of gamma-tubulin complex. Predicted to be active in centrosome and equatorial microtubule organizing center. Orthologous to human TUBGCP5 (tubulin gamma complex associated protein 5).

Ensembl:

ensembl_id ENSDART00000144812

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064904 lncRNA upstream 147592 37470116 ~ 37476101 (+) False XLOC_032178
TCONS_00062868 lncRNA upstream 147592 37474977 ~ 37476101 (+) True XLOC_032178
TCONS_00064903 lncRNA upstream 307784 37314337 ~ 37315909 (+) True XLOC_032175
TCONS_00062864 lncRNA upstream 316922 37305338 ~ 37306771 (+) True XLOC_032173
TCONS_00064902 lncRNA upstream 376043 37193900 ~ 37247650 (+) False XLOC_032172
TCONS_00062878 lncRNA downstream 73366 37725309 ~ 37725925 (+) True XLOC_032181
TCONS_00064905 lncRNA downstream 706738 38358681 ~ 38360443 (+) True XLOC_032185
TCONS_00062888 lncRNA downstream 866276 38518219 ~ 38590172 (+) True XLOC_032188
TCONS_00062900 lncRNA downstream 1228499 38880442 ~ 38885538 (+) True XLOC_032192
TCONS_00064906 lncRNA downstream 1301538 38953481 ~ 38955126 (+) True XLOC_032194
TCONS_00062870 mRNA upstream 23045 37529383 ~ 37600648 (+) False XLOC_032179
TCONS_00062869 mRNA upstream 23045 37529383 ~ 37600648 (+) False XLOC_032179
TCONS_00062871 mRNA upstream 92873 37529399 ~ 37530820 (+) True XLOC_032179
TCONS_00062867 mRNA upstream 168783 37441789 ~ 37454910 (+) True XLOC_032177
TCONS_00062865 mRNA upstream 312644 37308716 ~ 37311049 (+) True XLOC_032174
TCONS_00062875 mRNA downstream 3135 37655078 ~ 37692214 (+) False XLOC_032181
TCONS_00062876 mRNA downstream 3135 37655078 ~ 37730907 (+) False XLOC_032181
TCONS_00062879 mRNA downstream 100838 37752781 ~ 37781968 (+) False XLOC_032182
TCONS_00062880 mRNA downstream 102820 37754763 ~ 37847875 (+) True XLOC_032182
TCONS_00062881 mRNA downstream 242277 37894220 ~ 38054851 (+) False XLOC_032183
TCONS_00062866 other upstream 288730 37334559 ~ 37334963 (+) True XLOC_032176
TCONS_00062862 other upstream 407505 37193908 ~ 37216188 (+) True XLOC_032172
TCONS_00062861 other upstream 633009 36990570 ~ 36990684 (+) True XLOC_032171
TCONS_00062849 other upstream 1081591 36472721 ~ 36542102 (+) True XLOC_032162
TCONS_00062877 other downstream 63329 37715272 ~ 37717110 (+) False XLOC_032181
TCONS_00062883 other downstream 435552 38087495 ~ 38087611 (+) True XLOC_032184
TCONS_00062884 other downstream 725148 38377091 ~ 38377211 (+) True XLOC_032186
TCONS_00062893 other downstream 1121475 38773418 ~ 38782158 (+) True XLOC_032190
TCONS_00062894 other downstream 1193733 38845676 ~ 38858302 (+) False XLOC_032191

Expression Profile

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