RNA id: TCONS_00062875


Basic Information

Item Value
RNA id TCONS_00062875
length 1654
RNA type mRNA
GC content 0.49
exon number 15
gene id XLOC_032181
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 37655078 ~ 37730907 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAACTTCCAGCCCGAGCTGCGCCTGCGACAACATTCACCGCGAGCAGGATTCCTCCGCAAACTCCCTCAAACCTCTCCAAACAGCCGCTCATTACCACCGAAAACACTTTCACCAGTGGACTTCACTCTCTCAGCCGCCTCACGACTGGAAACCCCAccagaaaatgcatgaatgaacagTCGAAGCGGATAGTTTTTTTCCTGGAAAACCCAAGTACGGAGCAATGGCGTCCACAGTGACTCTGGAAGATGCTCTGTCCAATGTGGACTTGCTGGAGGAGCTGCCACTTCCAGATCAGCAGCCCTGCATCGAGCCTCTGCCCTCCTCACTCATTTACCAGCCCAACTTCAACACCAACTTTGAGGACCGCAATGCGTTTGTGACCGGCATCGCCCGTTACATCGAACAGGCCACCGTCCACTCCAGCATGAATGACATGTTAGAAGAAGGTCAGCAGTATGCTGTGATGCTGTACACGTGGAGGTGCTGTTCGAGAGCTATTCCTCAGGTGAAGTGTAATGAACAACCCAACAGAGTGGAGATCTACGAGAAGACTGTGGAGGTGCTCGAACCCGAAGTCAACAAACTAATGAACTTCATGTACTTTCAGAGGACAGCAATAGATCGCTTTTGTGGTGAAGTGCGTCGTCTCTGTCATGCAGAGCGGAGGAAAGACTTTGTGTCTGAAGCTTATCTGCTCACTCTGGGAAAGTTTATCAACATGTTTGCGGTGCTGGATGAACTTAAGAACATGAAGTGCAGCGTCAAAAATGACCACTCCGCCTACAAGAGAGCTGCTCAATTCCTGAGGAAAATGTCAGAGCCGTCATCAATTCAGGAATCCCAAAACCTATCTATGTTTCTGGCCAACCACAATAAGATCACTCAGTCCCTGCAGCAGCAGCTTGAAGTGATTAACGGATACGATGAGCTGTTGGCAGACATTGTTAACCTGTGTGTGGATTACTATGAAAACAAGATGTACCTCACCCCTAGTGAGAAACACATGCTACTCAAAGTAATGGGCTTTGGTCTCTATCTCATGGATGGAAGTAACAGCAACATCTACAAACTGGAAGCTAAGAAGAGAATCAACCTCACAAAGATCGACAAGTTCTTtaagCAATTGCAGGTAGTGCCTCTGTTTGGTGACATGCAGATTGAATTGGCTCGCTATATCAAAACCAGCGCTCACTACGAGGAAAACAAGTCTAGGTGGTCATGCACGTCAGCAGGCAGTAGCCCACAGTACAATGTCTGCGAACAGATGATTCAAATCCGGGAGGATCACATGCGCTTCATTTCTGAATTGGCTCGATACAGCAACAGTGAGGTGGTGACTGGCTCTGGGCGTCAGGACGCTCAGAAGACGGACTCTGAGTACAGGAAGTTGTTTGATCTGGCTCTGCAGGGCCTGCAGCTGCTCTCTCAGTGGAGCGCTCAGATCATGGAAGTGTATTCCTGGAAATTGGTGCATCCTACAGACAAATACTCCAACAAAGAATGCCCTGACAATGCTGAAGAGTATGAGCGTGCTACCAGATACAACTACACCAGTGAGGAGAAATTTGCTCTGGTGGAGGTCCTCGCCATGACTTTGCCCAAGTCACGCTCCGTGAACCGCTGCGCCAGGCcatcaagaaaaaaaagaa

Function

GO:

id name namespace
GO:0031529 ruffle organization biological_process
GO:0030154 cell differentiation biological_process
GO:0000902 cell morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0006417 regulation of translation biological_process
GO:0030031 cell projection assembly biological_process
GO:0099563 modification of synaptic structure biological_process
GO:0030032 lamellipodium assembly biological_process
GO:0007399 nervous system development biological_process
GO:0048675 axon extension biological_process
GO:0007411 axon guidance biological_process
GO:0008360 regulation of cell shape biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0001726 ruffle cellular_component
GO:0042995 cell projection cellular_component
GO:0043005 neuron projection cellular_component
GO:0045202 synapse cellular_component
GO:0030027 lamellipodium cellular_component
GO:0030054 cell junction cellular_component
GO:0031209 SCAR complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000340 RNA 7-methylguanosine cap binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8557 Predicted to enable RNA 7-methylguanosine cap binding activity and actin filament binding activity. Acts upstream of or within with a positive effect on axon extension. Predicted to be located in cytoplasm. Predicted to be part of SCAR complex. Predicted to be active in neuron projection and synapse. Human ortholog(s) of this gene implicated in autism spectrum disorder and schizophrenia. Orthologous to human CYFIP1 (cytoplasmic FMR1 interacting protein 1).

Ensembl:

ensembl_id ENSDART00000122199

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064904 lncRNA upstream 178977 37470116 ~ 37476101 (+) False XLOC_032178
TCONS_00062868 lncRNA upstream 178977 37474977 ~ 37476101 (+) True XLOC_032178
TCONS_00064903 lncRNA upstream 339169 37314337 ~ 37315909 (+) True XLOC_032175
TCONS_00062864 lncRNA upstream 348307 37305338 ~ 37306771 (+) True XLOC_032173
TCONS_00064902 lncRNA upstream 407428 37193900 ~ 37247650 (+) False XLOC_032172
TCONS_00062878 lncRNA downstream 33095 37725309 ~ 37725925 (+) True XLOC_032181
TCONS_00064905 lncRNA downstream 666467 38358681 ~ 38360443 (+) True XLOC_032185
TCONS_00062888 lncRNA downstream 826005 38518219 ~ 38590172 (+) True XLOC_032188
TCONS_00062900 lncRNA downstream 1188228 38880442 ~ 38885538 (+) True XLOC_032192
TCONS_00064906 lncRNA downstream 1261267 38953481 ~ 38955126 (+) True XLOC_032194
TCONS_00062874 mRNA upstream 2561 37625787 ~ 37652517 (+) True XLOC_032180
TCONS_00062872 mRNA upstream 3135 37623693 ~ 37651943 (+) False XLOC_032180
TCONS_00062873 mRNA upstream 3140 37623704 ~ 37651938 (+) False XLOC_032180
TCONS_00062870 mRNA upstream 54430 37529383 ~ 37600648 (+) False XLOC_032179
TCONS_00062869 mRNA upstream 54430 37529383 ~ 37600648 (+) False XLOC_032179
TCONS_00062879 mRNA downstream 60567 37752781 ~ 37781968 (+) False XLOC_032182
TCONS_00062880 mRNA downstream 62549 37754763 ~ 37847875 (+) True XLOC_032182
TCONS_00062881 mRNA downstream 202006 37894220 ~ 38054851 (+) False XLOC_032183
TCONS_00062882 mRNA downstream 202700 37894914 ~ 38054851 (+) True XLOC_032183
TCONS_00062885 mRNA downstream 689743 38381957 ~ 38513525 (+) False XLOC_032187
TCONS_00062866 other upstream 320115 37334559 ~ 37334963 (+) True XLOC_032176
TCONS_00062862 other upstream 438890 37193908 ~ 37216188 (+) True XLOC_032172
TCONS_00062861 other upstream 664394 36990570 ~ 36990684 (+) True XLOC_032171
TCONS_00062849 other upstream 1112976 36472721 ~ 36542102 (+) True XLOC_032162
TCONS_00062877 other downstream 23058 37715272 ~ 37717110 (+) False XLOC_032181
TCONS_00062883 other downstream 395281 38087495 ~ 38087611 (+) True XLOC_032184
TCONS_00062884 other downstream 684877 38377091 ~ 38377211 (+) True XLOC_032186
TCONS_00062893 other downstream 1081204 38773418 ~ 38782158 (+) True XLOC_032190
TCONS_00062894 other downstream 1153462 38845676 ~ 38858302 (+) False XLOC_032191