RNA id: TCONS_00062879


Basic Information

Item Value
RNA id TCONS_00062879
length 2606
RNA type mRNA
GC content 0.53
exon number 17
gene id XLOC_032182
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 37752781 ~ 37847875 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACACGACATGGCCGACATTAAAGTGCAGTAAAGCTGGTGGTAGGACCGAAGAAGCAAAGATTCAATAAGACAACCGAACAGGGAAGGCTGCGTCTGCAGCCAGGAGAGCCGAGGGAAGGATGCCTTCTCCATCATTTTCCCTGAATGCCCAGCTGCGCTTCCATGATAAATGGCTGAAGATCGACTTGCAGCGCGCCTTCTCTCATGAAGGACTGAGCGAGATGTGGAACGAGATGGTGAAGGATGAAGAGATCGTCTTTGACAGAGAAGAGTCTGCCcatccagagGACTGTGCTGATTGCACCCAAAAGAAAGATGACACCAATGATAAAGAAaagaaggaagaggaggaggcAGCAGCAACGGCGGCTTCATCTTTCCATCACTCCATCATTGAAATGTGGGACTGGGGGAGGCAGCCAGAAACCAGCGAGCTGCGGGACTGTCTGATGGCTTTGGTAGACGACCAACAGAAGCTGTCTTCTCAGACGGCTAAGAGCACACTCTCAGCCCTGCGTCTAAGCCAGAGACTGGTGATCCTGGAGCGCTACCTCATCTCGCTCACTCACAGCATGATGGAGGAGAAGTACAAAGTACGGTGGAAGAGCCCTCCCAGTCCTCCACTCTCTGCTGTCGACAACAAAAGCGCTCGGCCAGTTAGTAAAGGGGTGGAAGGTTTGGCCAGGGTGGGCTCAAGGGCAGCTCTTTCCTTTGCCTTTGCATTTCTCCGCCGAGCCTGGAGATCAGGAGATGATGCAGACCTGTGCAGTGAGTTACTGCAGGAGTCTCTGGATGCTCTGCGGGCTCTTCCAGAAGCTACTCTGTTTGATGAGGGCACTGTATCTCCTGTTTGGCTGGAGGTGGTTGAGAGGGCTACTAAATTTCTAAGtgACATCCATGGAAGTGCCAGTGGAAAAGCACCCAGTAACATTCCCTTGCAGGATCAGCACTTGGCCCTTGCCATCCTGCTGGAGCTCGCAGTGCAACGAGGAACTCTCAGTCAGCTGCTGTCTGCAGTTCTGCTGCTTCTGAGGCTCTGGGACAGTGGAACTAGAGAGATGGATAATGAGCGCTCCACCCAAGGCACCAGCGCCCCGTTACTGCCCCTCCTGCAGCGCTTCCAGAACATCCACAGCAGTAAAGAGGAGCCTGTTCCTGAAGAGGAGATTGAGATCCTTTCGGCCCCTCTGAGCCCGAATGAGAGTTTTCTGCGCTACCTTACACTGCCTCAAGATAATGACCTGGCCATTGATTTGCGGCAGACAGCTGTAGTCATCATGGCACATTTGGACCGCCTGGCAGCCCCATGCAGCCCCCCGCAGTGCAGCTCACCCACTTCTAACAAGGGGACACTGCAGGAGGTGATTGGTTGGGGTCTGCTTGGATGGAAGCCTTATGCTAATGTGAATGGACCAATTCAGTGCAAGGCACTATCAAATCTGGGTGTCACGCAGATTGTCTGCTCAGAGAAGGGTTTCCTCATCCTGACCATCACTGGTGCTGTCTACACACAAAACTACAAAAGTACTACACTAGCACCTATGCTAGTCCATGCACTGACGTCCAGGAAAATAATGAAGCTTGCAGCTCATCCTGATGGCCAGCATTATTTGGCTCTTTCAGTCAATGGAGAGGTTTTCTCCTGGGGTTGTGGAGATGGAGGCAGGCTAGGACATGGAGACACTACGTATTTAGAGGAGCCCACTATGATTTCAGTATTCTCAGGGAGGCCGGTAGGGAAGCAGGTTGTACATATTGCCTGTGGCAGCACATACAGCGCAGCCATCACAGCAGATGGAGAGCTTCACACATGGGGCCGAGGAAACTACGGCAGACTGGGCCATGGCTCCAGTGAGGACCAGACCACTCCCATGCTAGTAACTGCACTGAAGGGGCTGAAGGTGATCGATGTGGCCTGTGGAAGCGGAGATGCTCAGACGCTTGCTGTGACTGAGAATGGTCAGGTATGGTCATGGGGTGATGGAGATTATGGGAAACTGGGCCGAGGGGGCAGTGATGGATGCAAAACACCAAAACTAGTGGAGAAGCTCCAGGATCTGGATATTGTGAAGGTGTGCTGTGGGAGCCAGTTCTCCGTAGCGCTCACTAAAGATGGACAAGTTTACACCTGGGGCAAAGGAGACAATCAACGACTTGGACATGGCACTGATGAACATGTCCGCTATCCAAAACTACTTGACAGTCTGCAAGGCAAGAGGGTGGTGGACATAGCGGTTGGCTCCACACACTGCCTGGCCCTTACAGAAGAAGGAGAGGTGCACAGCTGGGGCAGTAATGACAAACTACAGCACTTTGACACACTTTTCTCCAATAAGAAGCAGCCCAAAGCCTTGCCAGGCCTCAACTCCAAACACATAGTAGGCATCTCCTGCGGTCCTGGCCAGagtttttcatggtcatcCTGCTCTGAGTGGTCTGTGGGTCTCCGGGTACCCTTCGTGGTAGACGTGTGCACTATGACCTTTGACCAGCTGGACCTGCTTCTGCGCCAGGTTAGTGAGGGCATGGACGGCAGCTCTGATTGGCCACCACCACAGGAGAAAGAATGCATGGTCGTGGCAGCTCTCAACCTGCTCAGACtacag

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis
ko04121 Ubiquitin system
ko03036 Chromosome and associated proteins
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-070718-6 Predicted to enable ubiquitin-protein transferase activity and zinc ion binding activity. Predicted to act upstream of or within protein ubiquitination. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability and pigmentation disease. Orthologous to human HERC2 (HECT and RLD domain containing E3 ubiquitin protein ligase 2).

Ensembl:

ensembl_id ENSDART00000154364

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062878 lncRNA upstream 26856 37725309 ~ 37725925 (+) True XLOC_032181
TCONS_00064904 lncRNA upstream 276680 37470116 ~ 37476101 (+) False XLOC_032178
TCONS_00062868 lncRNA upstream 276680 37474977 ~ 37476101 (+) True XLOC_032178
TCONS_00064903 lncRNA upstream 436872 37314337 ~ 37315909 (+) True XLOC_032175
TCONS_00062864 lncRNA upstream 446010 37305338 ~ 37306771 (+) True XLOC_032173
TCONS_00064905 lncRNA downstream 576713 38358681 ~ 38360443 (+) True XLOC_032185
TCONS_00062888 lncRNA downstream 736251 38518219 ~ 38590172 (+) True XLOC_032188
TCONS_00062900 lncRNA downstream 1098474 38880442 ~ 38885538 (+) True XLOC_032192
TCONS_00064906 lncRNA downstream 1171513 38953481 ~ 38955126 (+) True XLOC_032194
TCONS_00062917 lncRNA downstream 1588367 39370335 ~ 39378734 (+) False XLOC_032204
TCONS_00062876 mRNA upstream 21874 37655078 ~ 37730907 (+) False XLOC_032181
TCONS_00062875 mRNA upstream 60567 37655078 ~ 37692214 (+) False XLOC_032181
TCONS_00062874 mRNA upstream 100264 37625787 ~ 37652517 (+) True XLOC_032180
TCONS_00062872 mRNA upstream 100838 37623693 ~ 37651943 (+) False XLOC_032180
TCONS_00062873 mRNA upstream 100843 37623704 ~ 37651938 (+) False XLOC_032180
TCONS_00062881 mRNA downstream 112252 37894220 ~ 38054851 (+) False XLOC_032183
TCONS_00062882 mRNA downstream 112946 37894914 ~ 38054851 (+) True XLOC_032183
TCONS_00062885 mRNA downstream 599989 38381957 ~ 38513525 (+) False XLOC_032187
TCONS_00062886 mRNA downstream 645389 38427357 ~ 38476961 (+) False XLOC_032187
TCONS_00062887 mRNA downstream 645602 38427570 ~ 38513578 (+) True XLOC_032187
TCONS_00062877 other upstream 35671 37715272 ~ 37717110 (+) False XLOC_032181
TCONS_00062866 other upstream 417818 37334559 ~ 37334963 (+) True XLOC_032176
TCONS_00062862 other upstream 536593 37193908 ~ 37216188 (+) True XLOC_032172
TCONS_00062861 other upstream 762097 36990570 ~ 36990684 (+) True XLOC_032171
TCONS_00062849 other upstream 1210679 36472721 ~ 36542102 (+) True XLOC_032162
TCONS_00062883 other downstream 305527 38087495 ~ 38087611 (+) True XLOC_032184
TCONS_00062884 other downstream 595123 38377091 ~ 38377211 (+) True XLOC_032186
TCONS_00062893 other downstream 991450 38773418 ~ 38782158 (+) True XLOC_032190
TCONS_00062894 other downstream 1063708 38845676 ~ 38858302 (+) False XLOC_032191
TCONS_00062919 other downstream 1588652 39370620 ~ 39371875 (+) True XLOC_032204

Expression Profile

//