RNA id: TCONS_00062881


Basic Information

Item Value
RNA id TCONS_00062881
length 2412
RNA type mRNA
GC content 0.48
exon number 25
gene id XLOC_032183
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 37894220 ~ 38054851 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaccgactcccatacaaaggagttgctggttcgatcccaCATAGAAAAAAGTGCAGTTTTGAAAATACCTGTGTTATCACGCTGGGATTTAATAATTCTCTGCTTGTTCACAGGCACAGCTTCAACATGGTAAACCTCCTCAATGGCAAATCCAACCAAGCAAACCACACAGAGCGGACACCACTTCTCAAGTTCTCCCAAAATGATAGTATCACCTACATGACTCTGCATGAGCCCAGTCTGGGGTCTGGAGAGGAATCGTGGGAGGCGAGCTCTGCTGAACTGGAGAGAAGGTGCAGGCTGGGCAGTGAGGTCACCAGTCTCTCACACATTACATCCCCGGAGAAGAGTGAAAATTACTTCAAACTCTCTTTTCCCATCAGttcagttcagtgtggtttaaatttccaaataccaaatactgaagaACTCATCACCATCTTCGTTATTGTCGTTCTGTGTTCACTGTTTTTCAGCATGTATCCCGACCGGGAGAGCCCCTGGAGGATGCTGGCGGTCTCATCCACCGAGAGCTTCTCCATGAATCTTACTGATTTTCGTGACAACTCCTTGCTGAAGTTGCAAGTCGGTGGGCCATTTTTGGGAGGGATGGAGGCTGTGCAAGAGTCCCAGGAGTATATTCTCATCCAGGTGGAGCAGACTGAGGAGGCCGGGCCTCGCCGGAGAAGAACTCAGCAGGTGCTGTATAATTGGACCATACCACTGCACTCCCAGCGAAGTGACCAAATTCTGAGAACAAGGACATTTGAAATGGTTAGCAGCGCTCCTATTCAGATCAGCGTTCAGGCCTTTCTGCTGGACAATCAGGTAGTTCCTCTGTCCATGACTAACCAGTCGCTGTACGTGACGGTGGAAACACAGGTGCTCATCGCTGGTCTGATCCTGGCAGGAGTCTACGTGCTTATTATCTTTGAGATTGTTCACCGCACTCTGGCTGCAATGTTAGGATCCCTGTCTGCTCTGGCAGCTCTGGCTTTCATTGGAGATAGGCCGAGTCTTATGACTGTTGTGGAATGGATTGACTATGAGACGCTTGCCTTGCTATTTGGAATGATGATACTGGTGGCAATATTCTCGGAGACTGGTTTCTTTGATTACTGTGCGGTAAAGGCCTATCAGTTATCACGAGGAAGAGTTTGGCCCATGATTATCATTCTCTGCTTAATTGCTGCCATTCTGTCTGCCTTCCTTGATAATGTGACAACTATGATGCTCTTCACCCCTGTGACTATAAGGCTTTGTGAGGTGCTTAATCTGGACCCCAGGCAGGTCCTGATTGCAGAAGTAATCTTCACCAACATCGGAGGAGCTGCCACTGCTGTCGGAGATCCTCCCAATGTCATCATCGTATCCAACCAGGATCTCCGTAAAAAAGGGATTGACTTTGCGGCCTTTACGGGTTACATGTTCCTGGGAATCTGCCTGGTGCTGCTGACCTCGTTTCCCTTTTTGAGGTTGCTGTTCTGGAATAAGAAACTTTACAACAAGGAATCAAGTGAAATCGTGGAGCTGAAGCATGAGATTCTGGTGTGGAGGCAGACAGCCCATCGCATTAACCCTGCCAGCCGAGAGGAGACCGCCGTCAAGTGTCTTCTCATGCAGAAGGTGCTCAATCTGGAAAGCCTCCTGCGCAAGAAGCTCAAGACCTTCCAGAGGCAGATTTCGCAGGAAGACAAAAACTGGGAGCACAATATTCAAGAGCTGCAGAAAAAGcACAGAATAACAGACAAAGTCCTCTTGGTGAAGTGCTTGACTGTCCTCGGTGTGGTCATTTTCATGTTCTTCCTGAACTCCTTTGTTCCTGCCATACATCTGGATTTGGGTTGGATCGCTATCTTGGGGGCTCTGTGGTTACTGGTGCTTGCTGACATTCAGGACTTTGAGATCATTCTTCATAGAGTAGAATGGGCCACGCTGTTGTTCTTCGCTGCTCTGTTTGTGCTCATGGAGGCTCTCGCTCAGCTGCAGCTCATCGACTACATTGGGGAGCAGACTGCAGTGTTGATAAAAGCAGTGCCAGAGGATGAACGGTTGGCCATCGCCATCATTTTGGTATTGTGGGTTTCAGCGCTGGCGTCCTCTCTAATAGACAACATTCCCTTCACTGCCACTATGATTCCAGTACTCATAAATCTCAGTCAAGATGCCGATGTCAACTTGCCAATCAAACCTCTCATATTTGCATTGGCTATGGGAGCATGCCTTGGAGGAAATGGTACACTGATTGGAGCATCTGCAAACGTGGTGTGTGCTGGGATTGCTGAACAGCACGGCTATGGATTTTCCTTCATGGAGTTCTTCAGGTTGGGCTTCCCTATGATGCTTATGACCTGCACAATAGGCATGTGTTACCTGCTCGCAACCCACATCGGACTTCACTGGAACACATAA

Function

GO:

id name namespace
GO:0042438 melanin biosynthetic process biological_process
GO:0050935 iridophore differentiation biological_process
GO:0055085 transmembrane transport biological_process
GO:0043473 pigmentation biological_process
GO:0030318 melanocyte differentiation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko01009 Protein phosphatases and associated proteins
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-070718-4 Acts upstream of or within iridophore differentiation; melanin biosynthetic process; and melanocyte differentiation. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in actinic keratosis; oculocutaneous albinism type II; pigmentation disease; skin cancer (multiple); and squamous cell carcinoma. Orthologous to human OCA2 (OCA2 melanosomal transmembrane protein).

Ensembl:

ensembl_id ENSDART00000087311

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062878 lncRNA upstream 168295 37725309 ~ 37725925 (+) True XLOC_032181
TCONS_00064904 lncRNA upstream 418119 37470116 ~ 37476101 (+) False XLOC_032178
TCONS_00062868 lncRNA upstream 418119 37474977 ~ 37476101 (+) True XLOC_032178
TCONS_00064903 lncRNA upstream 578311 37314337 ~ 37315909 (+) True XLOC_032175
TCONS_00062864 lncRNA upstream 587449 37305338 ~ 37306771 (+) True XLOC_032173
TCONS_00064905 lncRNA downstream 303830 38358681 ~ 38360443 (+) True XLOC_032185
TCONS_00062888 lncRNA downstream 463368 38518219 ~ 38590172 (+) True XLOC_032188
TCONS_00062900 lncRNA downstream 825591 38880442 ~ 38885538 (+) True XLOC_032192
TCONS_00064906 lncRNA downstream 898630 38953481 ~ 38955126 (+) True XLOC_032194
TCONS_00062917 lncRNA downstream 1315484 39370335 ~ 39378734 (+) False XLOC_032204
TCONS_00062880 mRNA upstream 46345 37754763 ~ 37847875 (+) True XLOC_032182
TCONS_00062879 mRNA upstream 112252 37752781 ~ 37781968 (+) False XLOC_032182
TCONS_00062876 mRNA upstream 163313 37655078 ~ 37730907 (+) False XLOC_032181
TCONS_00062875 mRNA upstream 202006 37655078 ~ 37692214 (+) False XLOC_032181
TCONS_00062874 mRNA upstream 241703 37625787 ~ 37652517 (+) True XLOC_032180
TCONS_00062885 mRNA downstream 327106 38381957 ~ 38513525 (+) False XLOC_032187
TCONS_00062886 mRNA downstream 372506 38427357 ~ 38476961 (+) False XLOC_032187
TCONS_00062887 mRNA downstream 372719 38427570 ~ 38513578 (+) True XLOC_032187
TCONS_00062889 mRNA downstream 571833 38626684 ~ 38726402 (+) False XLOC_032189
TCONS_00062890 mRNA downstream 572075 38626926 ~ 38730530 (+) True XLOC_032189
TCONS_00062877 other upstream 177110 37715272 ~ 37717110 (+) False XLOC_032181
TCONS_00062866 other upstream 559257 37334559 ~ 37334963 (+) True XLOC_032176
TCONS_00062862 other upstream 678032 37193908 ~ 37216188 (+) True XLOC_032172
TCONS_00062861 other upstream 903536 36990570 ~ 36990684 (+) True XLOC_032171
TCONS_00062850 other upstream 1382290 36511812 ~ 36511930 (+) True XLOC_032163
TCONS_00062883 other downstream 32644 38087495 ~ 38087611 (+) True XLOC_032184
TCONS_00062884 other downstream 322240 38377091 ~ 38377211 (+) True XLOC_032186
TCONS_00062893 other downstream 718567 38773418 ~ 38782158 (+) True XLOC_032190
TCONS_00062894 other downstream 790825 38845676 ~ 38858302 (+) False XLOC_032191
TCONS_00062919 other downstream 1315769 39370620 ~ 39371875 (+) True XLOC_032204

Expression Profile

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