RNA id: TCONS_00062885


Basic Information

Item Value
RNA id TCONS_00062885
length 3594
RNA type mRNA
GC content 0.43
exon number 11
gene id XLOC_032187
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 38381957 ~ 38513578 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cacacacacacacacacactcgtctgtctctctctctttcaatagTTCCATCCATTCTGTCAGGCCAGGCCTCTACGTTTGGGATATACTCTTTCTCTGCTTGCATAAAGGGGCAACTAAAAAGGGGGGCAAACAGCACCAAATCTAGTCTGGATCAGAGGAGACGGATCAAGTGGATCAGATGAAGATGATGACAAGCTGTTGAGCCTTGGAAGTCAAGGAAAAGTTTGAACATTGTGAGGGCCCTGGGGGCAAAGATGTCCTCGTCACGAGGGGCTCGACGCATCCCCTTCATCTCGCACTGCCCTTTATTTCAATGACCGGGAAGAAAGCACATCTGGCAGTGCCCCATTTCAAATATTCCGCCTTGGATGCGCCTTGCCGGGTGGGACTCTTTGAGAGCTGAAAACATGCGACTGTGGTGGATTTTACTGCTAAGCTTTTGGAGTGTTTATGGAGAACTCCCATTCATAGCAGAAAACAACGCTGCCATGCTGGTCAACTGGAATGCTGTGGATGGAAATAAAAAGCTGTTTGCAATTTATGACACAAGcgCCAATGAACCAGGAAACATGTCTTTTGTCAAAGAGACAGTAGACAAGCTTTTGAAAGGCTATGATATTCGTCTACGACCAGATTTTGGAGGTGCACCGGTTGCAGTTGGCATGAGTATTGATGTGGCGAGCATAGACATGGTGTCTGAGGTCAACATGGACTACACGTTGACCATGTATTTCCAACAGTACTGGAGGGACAAGCGGCTGGCATATACTGGGATTCCTCTTAATCTCACTTTAGATAACAGAGTAGCTGACCAGCTCTGGGTTCCTGACACATATTTCCTAAATGACAAAAAGTCTTTTGTACACGGCGTCACAGTGAAGAACCGCATGATCCGCCTGCATCCAGATGGGACAGTTCTTTATGGATTAAGAATCACTACGACTGCTGCTTGCATGATGGATCTGAGAAGGTATCCATTAGATGAGCAGAATTGCACTCTGGAGATTGAGAGTTATGGATACACAACAGATGACATCGAGTTTTACTGGAAGGGAGGAGAAACCGCAGTGACGGGTGTGTCACGCATCGAGCTCCCGCAGTTCTCCATCGTTGACTACAAACTTGTGTCCAGAAATGTTGTCTTTTCCACAGGTGCCTATCCTCGACTATCTTTGAGCTTCAAGCTAAAAAGAAACATCGGCTACTTCATCCTGCAGACCTACATGCCCTCGATCCTGATCACCATCCTGTCCTGGGTCTCCTTCTGGATCAACTACGATGCCTCAGCAGCCCGAGTGGCATTAGGTATCACCACTGTGCTGACCATGACCACAATCAACACCCACTTGAGAGAAACTCTACCGAAGATTCCATATGTCAAAGCAATAGACATGTATCTGATGGGCTGCTTCGTCTTTGTTTTCTTGGCTCTGCTGGAATACGCTTTCGTCAACTACATTTTCTTTGGACGAGGGCCTCAGATGCAGAAGAAATTGGCTGAGAAAGCTGAGAAAGCCAATAATGACCGCAACAAGTATGACGGCAACAAGTCTGTTCAAGAGGGAGGAAACTGCAAGCCATCATCTGTTAAACAGTCCAATCAGGTACAAGGCCACCGTCACTCACGagggGTGGACTCCCAGGGAAATATTCTTCTGACCACCCTGGAGATCCACAACGAGGTGGCCGGGAACGAGATCACCACCAGCGTCAGCGAGGCTCGAAACTCCACTTCAATGGTGTTCGATAACTCAGGGATCCAGTATCGCAAACAGAGCACAGCGCGGCACAGCATGGACAGAAACGCACAGTCCAAGAAACCGCGACTACGCAGACGCTCTTCACAGCTCAAAATCAAAATCCCTGACCTCACAGACGTGAACGCCATCGACCGATGGTCACGGATTATATTTCCCGCAGTTTTCTCGCTTTTCAACTTGATCTATTGGCTGTATTATGTGAATTAGGCCTCAGGCGTCCGTTGGGTTTTTTTGGCCCTTCACGATTTTTTCATGTTGCCAAGTGgaaaattagactttttttttctttctttgctctGATGTACTTTACGGACGTGCTCGCACGCCATAttgaatttttttacatttgaaccCTTGTGATGTTATAAAGGGTTGGGACTGAATGCTACCTGCACTAAATGGGCCGTCCCGTACAGTACATTTCCAGTGACATCAACAAAATCAGTTTTCTAAAGATACATGTCATAATTTCCGAAGCCACAGGACTTCCGCATGATGCATTCAgagctgtttttaatttgtacATGTTGCTATGTTATTCCGATCGAAAGACTGCTAATGTTTCATGCCAATACGTCTTTACTGTTGGAGCACAGGGGATGAATATTAAAAGAAGACTATATAGTTATGGAAATGCAATATAACAAGGGTTGTAGTTCAAATCACGTCTTCAAAACATTGTCATTATGATCTTATTTAGACGACGTTTGTATATAATCATGTCACGATATGCTTTTGGAACATGATTTCCATCCGCCTTGGGTTGATATGATTATGCGCCACTTTTTGCAATCATCATGTAAAGTGCTTCAGTACATGTACGATAAGATAATAACTGTTCACTCAAGGATATCAACAACAACTAAAATGAGAAAAGGAACAAAAAAGGGGAATATTTAAATCAGGGCCTGCAAAGGATTTCCATGATGCCATCCTGAACATCAAACACAAGAAGACGAACAATCCTCACattgtgttttgctttttgttagtAGACGTGTAGCAATGACTTTGATTTTCAAGTGAGGTTTGGGTGTTTTGTtcccctccttttttttttaagtatgcctGAGTCATTTCACATATCATCGTAGGCCTTTTGGAAACATCATATGGGCCCACTTACATCTTCATCCTTTTCCCTTCCTGAAAGGGGTTATTTACATGAACGCATTTGAGGGAATTGTATGCTGGCATCAACACATAACTTGTCTCAGGTTCTCTTCCAACAAGAAAATGATCCGTATTTTTCTGATCGTCAGTATTCGCATCATCTTTGTTGTGATTAATTTGTATTATATCCTTGTGTACAGCAACGATTACATAGCAGATTTAGAGCGCATGATATTGTTTGCATTTTGCGATTCTACagtgactgtatccgatttttgTTTTGGCAGATTTCTTTACCACCAGTCATATGCACTTACTCAGTTTCTGGGGCCGAAAACTGCTGTCTGGTTAGAGAGTAATGTATTCTCATGCTTGCAAACcatcaaatatatttataaatctcTTTAAAATATCCCGTGTGTGCTGTTAACATGTCATTTAACAGGTTGCTTTGCAGTTACATTGTGTCAGTAGATGCTCATTAATTCTTGAATTACTTTTCTTCCCTCTTCTATTGTATGTTGTAAATATATAACCCACGATCCACACATGATCCATTTCTCTGTTCCCTTTTTTTCTAATATTCACTTCTGAGGTTTTATTCTGTACAAATGACAAGAACTCTATTTATGAAATGTGTTTAAACTATTAGACATATGAGGGGTGAATGTCCAAAGGACAACATGAGGAAATGGAATAAACTTTACTCTTTCAAGTA

Function

GO:

id name namespace
GO:0042391 regulation of membrane potential biological_process
GO:0050877 nervous system process biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0007165 signal transduction biological_process
GO:0043005 neuron projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:1902711 GABA-A receptor complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004890 GABA-A receptor activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function
GO:0005254 chloride channel activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-101102-2 Predicted to enable neurotransmitter receptor activity. Predicted to contribute to GABA-A receptor activity and chloride channel activity. Predicted to be involved in several processes, including chemical synaptic transmission; chloride transmembrane transport; and regulation of membrane potential. Predicted to act upstream of or within chloride transport. Predicted to be integral component of membrane. Predicted to be part of GABA-A receptor complex. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in eye and telencephalon. Human ortholog(s) of this gene implicated in childhood absence epilepsy and developmental and epileptic encephalopathy 43. Orthologous to human GABRB3 (gamma-aminobutyric acid type A receptor subunit beta3).

Ensembl:

ensembl_id ENSDART00000087300

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064905 lncRNA upstream 21514 38358681 ~ 38360443 (+) True XLOC_032185
TCONS_00062878 lncRNA upstream 656032 37725309 ~ 37725925 (+) True XLOC_032181
TCONS_00064904 lncRNA upstream 905856 37470116 ~ 37476101 (+) False XLOC_032178
TCONS_00062868 lncRNA upstream 905856 37474977 ~ 37476101 (+) True XLOC_032178
TCONS_00064903 lncRNA upstream 1066048 37314337 ~ 37315909 (+) True XLOC_032175
TCONS_00062888 lncRNA downstream 4694 38518219 ~ 38590172 (+) True XLOC_032188
TCONS_00062900 lncRNA downstream 366917 38880442 ~ 38885538 (+) True XLOC_032192
TCONS_00064906 lncRNA downstream 439956 38953481 ~ 38955126 (+) True XLOC_032194
TCONS_00062917 lncRNA downstream 856810 39370335 ~ 39378734 (+) False XLOC_032204
TCONS_00064909 lncRNA downstream 1018953 39532478 ~ 39538006 (+) False XLOC_032208
TCONS_00062881 mRNA upstream 327106 37894220 ~ 38054851 (+) False XLOC_032183
TCONS_00062882 mRNA upstream 327106 37894914 ~ 38054851 (+) True XLOC_032183
TCONS_00062880 mRNA upstream 534082 37754763 ~ 37847875 (+) True XLOC_032182
TCONS_00062879 mRNA upstream 599989 37752781 ~ 37781968 (+) False XLOC_032182
TCONS_00062876 mRNA upstream 651050 37655078 ~ 37730907 (+) False XLOC_032181
TCONS_00062889 mRNA downstream 113159 38626684 ~ 38726402 (+) False XLOC_032189
TCONS_00062890 mRNA downstream 113401 38626926 ~ 38730530 (+) True XLOC_032189
TCONS_00062891 mRNA downstream 259851 38773376 ~ 38790064 (+) False XLOC_032190
TCONS_00062892 mRNA downstream 259892 38773417 ~ 38790055 (+) False XLOC_032190
TCONS_00062895 mRNA downstream 332172 38845697 ~ 38861349 (+) False XLOC_032191
TCONS_00062884 other upstream 4746 38377091 ~ 38377211 (+) True XLOC_032186
TCONS_00062883 other upstream 294346 38087495 ~ 38087611 (+) True XLOC_032184
TCONS_00062877 other upstream 664847 37715272 ~ 37717110 (+) False XLOC_032181
TCONS_00062866 other upstream 1046994 37334559 ~ 37334963 (+) True XLOC_032176
TCONS_00062862 other upstream 1165769 37193908 ~ 37216188 (+) True XLOC_032172
TCONS_00062893 other downstream 259893 38773418 ~ 38782158 (+) True XLOC_032190
TCONS_00062894 other downstream 332151 38845676 ~ 38858302 (+) False XLOC_032191
TCONS_00062919 other downstream 857095 39370620 ~ 39371875 (+) True XLOC_032204
TCONS_00062936 other downstream 1530090 40043615 ~ 40049445 (+) True XLOC_032217
TCONS_00062945 other downstream 2032340 40545865 ~ 40546975 (+) False XLOC_032225

Expression Profile

//