RNA id: TCONS_00062893


Basic Information

Item Value
RNA id TCONS_00062893
length 865
RNA type processed_transcript
GC content 0.46
exon number 4
gene id XLOC_032190
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 38773376 ~ 38790064 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAATATTTTGTGGAGGGGTTGGAGTTGAATACACGCCGCACTAGAAGCGATTGTGATGTTGAGAGACCAGATTCATTCGTCAGCATCAGAACACCTCCAAAAGATTGCTACCTGACAACCTTTGGGTCTCTTTGAGTTCAGAGCCGTAGAAGAGTGTGATATTGGAAACTTTAAAGCAAGTCTAATAAAGGAGCCAGTTCAGCCTTCCCGGAGAACAGTGCCAAAGGAGCTCACAACTTCTCTGCTTGCAGCAACGGAAAGATGAACCATAAGGACCTGCCACCCACAAGGGAGGACTTTAGAGaTCTGAATTTCTTGACTGAGGATAAGGTGTATGAAATCCTGAGCATCTGCAGTGAGACAGAGGACTATTCTCCTCTAATCCGTGTTATTGGTCGGGTTTTCTCAAGTGCAGAGAGTCTAGTCCAGAGTTTCCGCAAAGCAAAACAACACACCAAGGAAGAGCTCAAGTCCCTTCAGGCCAAGGATGAAGACAAAGATGAAGATGAGAAAGAAACGGCTTCTGGTTCATCCACAGCAATGGAGGTGGAACCAGAAGCTTCAGCATCAAGTGGAGACGGGTCATCTCATGGGGAGAACAACGTCCAAAAGTTGAGTCCTGTAGAAGTTTCTGTAGACATTGATGCTGTAAGAAGAGTGTACGACAGATTATTATCGAATGAGAAGATTGAGGCAGCTTTCCTCAACGCGTTAGTCTACTTGTCGCCCAACGTAGAGTGTGACCTCACCTATCACAATGTGTACGCCGCTGACCCTAATTACCTGAACGTCTTCATCATTGTGATGGAGAACAGTAACCTCCACAGTCCCGAATACTTAGAAATCGCCTTGCCACAGTTCTGCA

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0016874 ligase activity molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis
ko05203 Viral carcinogenesis
ko05165 Human papillomavirus infection
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-041114-190 Predicted to enable ligase activity and ubiquitin protein ligase activity. Predicted to be involved in protein K48-linked ubiquitination. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be located in cytosol and nucleus. Predicted to be part of proteasome complex. Human ortholog(s) of this gene implicated in Angelman syndrome. Orthologous to human UBE3A (ubiquitin protein ligase E3A).

Ensembl:

ensembl_id ENSDART00000129655

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062888 lncRNA upstream 183246 38518219 ~ 38590172 (+) True XLOC_032188
TCONS_00064905 lncRNA upstream 412975 38358681 ~ 38360443 (+) True XLOC_032185
TCONS_00062878 lncRNA upstream 1047493 37725309 ~ 37725925 (+) True XLOC_032181
TCONS_00064904 lncRNA upstream 1297317 37470116 ~ 37476101 (+) False XLOC_032178
TCONS_00062868 lncRNA upstream 1297317 37474977 ~ 37476101 (+) True XLOC_032178
TCONS_00062900 lncRNA downstream 98284 38880442 ~ 38885538 (+) True XLOC_032192
TCONS_00064906 lncRNA downstream 171323 38953481 ~ 38955126 (+) True XLOC_032194
TCONS_00062917 lncRNA downstream 588177 39370335 ~ 39378734 (+) False XLOC_032204
TCONS_00064909 lncRNA downstream 750320 39532478 ~ 39538006 (+) False XLOC_032208
TCONS_00064908 lncRNA downstream 750320 39532478 ~ 39538006 (+) False XLOC_032208
TCONS_00062890 mRNA upstream 42888 38626926 ~ 38730530 (+) True XLOC_032189
TCONS_00062889 mRNA upstream 47016 38626684 ~ 38726402 (+) False XLOC_032189
TCONS_00062887 mRNA upstream 259840 38427570 ~ 38513578 (+) True XLOC_032187
TCONS_00062885 mRNA upstream 259893 38381957 ~ 38513525 (+) False XLOC_032187
TCONS_00062886 mRNA upstream 296457 38427357 ~ 38476961 (+) False XLOC_032187
TCONS_00062895 mRNA downstream 63539 38845697 ~ 38861349 (+) False XLOC_032191
TCONS_00062896 mRNA downstream 63690 38845848 ~ 38850457 (+) True XLOC_032191
TCONS_00062897 mRNA downstream 97803 38879961 ~ 38894366 (+) False XLOC_032192
TCONS_00062898 mRNA downstream 98008 38880166 ~ 38893499 (+) False XLOC_032192
TCONS_00062899 mRNA downstream 98017 38880175 ~ 38887112 (+) False XLOC_032192
TCONS_00062884 other upstream 396207 38377091 ~ 38377211 (+) True XLOC_032186
TCONS_00062883 other upstream 685807 38087495 ~ 38087611 (+) True XLOC_032184
TCONS_00062877 other upstream 1056308 37715272 ~ 37717110 (+) False XLOC_032181
TCONS_00062866 other upstream 1438455 37334559 ~ 37334963 (+) True XLOC_032176
TCONS_00062862 other upstream 1557230 37193908 ~ 37216188 (+) True XLOC_032172
TCONS_00062894 other downstream 63518 38845676 ~ 38858302 (+) False XLOC_032191
TCONS_00062919 other downstream 588462 39370620 ~ 39371875 (+) True XLOC_032204
TCONS_00062936 other downstream 1261457 40043615 ~ 40049445 (+) True XLOC_032217
TCONS_00062945 other downstream 1763707 40545865 ~ 40546975 (+) False XLOC_032225
TCONS_00062987 other downstream 2412529 41194687 ~ 41194801 (+) True XLOC_032251