RNA id: TCONS_00062894


Basic Information

Item Value
RNA id TCONS_00062894
length 770
RNA type processed_transcript
GC content 0.49
exon number 3
gene id XLOC_032191
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 38845676 ~ 38861349 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCTCAGTTCATTCAAGATTCATTCCGTTCGGACCAGATGCAGGACGGTCGCTGAATCGCCGTATGAAAACAAACCAGATGTCAGCTAATATTTAAGCGCTGCTGAACTTCCTCGAGCCCTGGAGCTATGAACGCGGAAGATATTTGCCAACGCACGCACACAACGTGAGGAGGCGCGATGAACGCAAAGGACCGAGAGCGGCGCCGGACGCGCAAAGCTGGCAAACGAGCCGAAAGCGCGAGTGTCCTGCGCTCGCTCAGCGTCGACAACATTGACGAGGAGAATGAAACAATGGCAGGCGAGCTGGACATGGGCAAACATGGCAGCCTGGAGAGGCGGATCATTGCTCCGCGGTACAGCTTGCTCCGACATGCTGGCTGTCAATCCTCAGGACCGACCAGACGCTCTGGAGCTGCACAATAGGATGGGACAGGTCACTTGCGCGGCGTGAACTTTGACCTCTGTCCTAAAAGCATTGCACACACAGGTTTACCTGTTCCACGAGAGACCAGAAGGGACTGCATTGCTTGGAAAGCTGTGAATCTTCCACTGCTGATTTAATGTGAAGAGTACAAAGTACTCAACTTGGACACCAATACAATGTTTGCCACATGtagattttttgtttacagtAGTGATTTAAACAAATCATTCATCAAGCCCAGAAGTGTTCAGCCAAATTCAATCACCGGTTACGTCACTAAGAGTGAAGTAATGCTAAAAAAATGTTGAGATACAGTAAGTACAATCAAGCTAAAACTTGCAAGCT

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0051321 meiotic cell cycle biological_process
GO:0016310 phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041212-52 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in meiotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in nucleus. Orthologous to human STK35 (serine/threonine kinase 35).

Ensembl:

ensembl_id ENSDART00000139831

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062888 lncRNA upstream 255504 38518219 ~ 38590172 (+) True XLOC_032188
TCONS_00064905 lncRNA upstream 485233 38358681 ~ 38360443 (+) True XLOC_032185
TCONS_00062878 lncRNA upstream 1119751 37725309 ~ 37725925 (+) True XLOC_032181
TCONS_00064904 lncRNA upstream 1369575 37470116 ~ 37476101 (+) False XLOC_032178
TCONS_00062900 lncRNA downstream 22140 38880442 ~ 38885538 (+) True XLOC_032192
TCONS_00064906 lncRNA downstream 95179 38953481 ~ 38955126 (+) True XLOC_032194
TCONS_00062917 lncRNA downstream 512033 39370335 ~ 39378734 (+) False XLOC_032204
TCONS_00064909 lncRNA downstream 674176 39532478 ~ 39538006 (+) False XLOC_032208
TCONS_00064908 lncRNA downstream 674176 39532478 ~ 39538006 (+) False XLOC_032208
TCONS_00062891 mRNA upstream 55612 38773376 ~ 38790064 (+) False XLOC_032190
TCONS_00062892 mRNA upstream 55621 38773417 ~ 38790055 (+) False XLOC_032190
TCONS_00062890 mRNA upstream 115146 38626926 ~ 38730530 (+) True XLOC_032189
TCONS_00062889 mRNA upstream 119274 38626684 ~ 38726402 (+) False XLOC_032189
TCONS_00062887 mRNA upstream 332098 38427570 ~ 38513578 (+) True XLOC_032187
TCONS_00062897 mRNA downstream 21659 38879961 ~ 38894366 (+) False XLOC_032192
TCONS_00062898 mRNA downstream 21864 38880166 ~ 38893499 (+) False XLOC_032192
TCONS_00062899 mRNA downstream 21873 38880175 ~ 38887112 (+) False XLOC_032192
TCONS_00062901 mRNA downstream 37856 38896158 ~ 38902498 (+) False XLOC_032193
TCONS_00062902 mRNA downstream 37938 38896240 ~ 38899167 (+) True XLOC_032193
TCONS_00062893 other upstream 63518 38773418 ~ 38782158 (+) True XLOC_032190
TCONS_00062884 other upstream 468465 38377091 ~ 38377211 (+) True XLOC_032186
TCONS_00062883 other upstream 758065 38087495 ~ 38087611 (+) True XLOC_032184
TCONS_00062877 other upstream 1128566 37715272 ~ 37717110 (+) False XLOC_032181
TCONS_00062866 other upstream 1510713 37334559 ~ 37334963 (+) True XLOC_032176
TCONS_00062919 other downstream 512318 39370620 ~ 39371875 (+) True XLOC_032204
TCONS_00062936 other downstream 1185313 40043615 ~ 40049445 (+) True XLOC_032217
TCONS_00062945 other downstream 1687563 40545865 ~ 40546975 (+) False XLOC_032225
TCONS_00062987 other downstream 2336385 41194687 ~ 41194801 (+) True XLOC_032251
TCONS_00062995 other downstream 2596489 41454791 ~ 41454873 (+) True XLOC_032256

Expression Profile

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