RNA id: TCONS_00062897


Basic Information

Item Value
RNA id TCONS_00062897
length 3376
RNA type mRNA
GC content 0.40
exon number 13
gene id XLOC_032192
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 38879961 ~ 38894366 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAGCCACCATTTAAACTAAAAAATGTCGTGGttaaatatatttgcaaaacCATATAACTTATGGTTAGGGCTACCGCTGTCAGCCAATaggtattttgttattttaaaattaaagcatTTTATGTTAAGGCCAATTAAAGTAACGTCAGTAGTTACTATTTTTAACGTACCCCACGGCTAAATTAACAGGAAACACTGATGACTAAAGTTGATGATGCAGTCGCGCGTCGATGACAATTTACCAAACACGTTTGGGCACGACGGAGGAATGTTGCAAAATTGGCTAGTCAGCGTCCTGCCGTGACTTGTGGTAACTTTATAGAAGGAAGCGCCGAGACATCAGAGAGAAGATCGCCTGTGTGCCAACTAATCTGAGCTGAAGATGGCTGACGGAAAACTAGGTACCAACATTGGGGGTAACATTGGCGCGGGagctggcatcctggccaaacgCTTTCAGAAATCAATGAATCGAGCACAAGAGAAGGTCCTGCAGAAGCTGGGAAAAACCATGGAGACCAAAGATGAGCAGTTTGAGGAGTGCTCTGCCAATCTGAACAAACAGCAGACAGATGGCATCAGACTCTACAAGGACGTTAAAGCTTACTACAATGCGGTTAAAGTGATGCATGAATCATCCAAACGGCTGTCCCAGACTCTTAAAGATATCTATGAACCAGACTGGCATGGTGTAGAAGATCTTACTGTCATAATGGAGAGTGAGGATCTTTTGTGGAATGACTACGAGGAGAAGCTAAACGATCAAGTCGTTCGAACAATGGAGAACTACACCGCACAGTTCCAAGATGTCAAAGAAAGAGTAGCTAAACGAGGAAGGAAACTAGTTGATTATGATTCGACCCGTCATCATCTGGAGGCGTTACAAAGCGCCAAGAAGAGAGATGATGCCAAAGTAAATAAGGCTGAGGAAGAGTTTAACAAAGCCCAGGAGGTATTTGAAGACATTAACAAAGAGTTGAGAGAGGAACTGCCTGTTCTCTATCAAAGTCGTATCAGTTGCTATGTCACCATGTTCCAGAACATCTCAAACCTGCGGGATGTTTTCTACAAGGAGATGAGTATGTTGAATCACAACATTTATAATATGATGAAGAAGCTTGAAGATCAGCACTCCACCAAACCCTTCATAGTTAAAGGACTAAACagTTCTAAATCAAAGAAGAGAAAATCTGTTACGATCTCTGCACCGATCCCCTGTAACACCGCCTTCCCTACTGATCATCCGGCTATGAGCAAGCTCAGCATGCCCGACACCctcgcacacacagacacacgcatacacactccCTCAAAGAGCACAGAAATATCAGAATCCGAGTCAGACTCTTTTGACAGTGAACCCAACACCCCCAAACGGCAGTCTTTGTGTTCAGTTCGTTCTGATGGAGCCAGCGAAAACACATCTGGGAGTACCACTGATGAGACCGTACAAGCAAACGGTCAGGAACATCAAGATTCAGTGTCTGTTGAGCGCCAGGAAGAGGAGGAATCTAAATTATCACAAGCAGCATCATCAGAGGACGCCCATAATGCATCAACAGATGGAGACGATCAGACTAAACTTTTATCGGCCGATGAGGACAAACCTGCACCCATCCCCACTCCTCGAAGATCCAGCACATCAAAGAAGGATGAAGGAGAGacaaatgaaaatacaaaaggaTCCAGTGAAGATGTGAAGGAACAAAAGACGGAGTATGAAAATCCTCCAGGTTTCCTCTATAAGGCTGTTGCTCTGAAGAGTCAAGACTCAGATGAAGGTGTGCTGCTTCTGTTTGAAAAGGGAGATCTGATCCTTACGTTTGTAGATGATGAAGAAGAAAAGCCTGACGGCTTTGTGTGGGGAGTGAGAGAGCAGGACTGGATCCAGTACAAGGATCTGACTCTTCTCTCCGGCATCGTGGAGGAGTCTGAGATCGAGCGCATCACCTCATGAAGGGCGCCATGTGAACCCAAAGCCCCTTCAGTGCCTGTGGAGTGTCCTCATGACTGGATGTTGTAATATGAACTCTGTCTGCACTGTGCTCTAGACTTGAAAGACACTCTTGTCTTGTCATTTGTTGTCTTTACAAACTTCCTGTTGCGGACTCGACCCTGCAGACAGTCTTAGTCCTTTATTTTCAGATCTTCTCTGACTTTTATAGATCCTAATAACAATCACTAGATTTACACATCATTTATCATTTGTCACTGTTTAATACTTATGAACGTTCCAGTATATTgtgtacaaaaaatatatatttttaaacattttcaagtGGTGAATATTAATACAGTTTCTGTTGAATTAGCATCTTGTGGCTCTATGTGTGTCTTGTAATGTTTACCGTCTGTTGTTTCTCATaaaactcagtgttaaaggttgACTACCAAGCTTGTGACAATGTTTACAGGACCAAAAAAAGTTTCTGATGTTCACTGTGAAGCAGTTTTCTAATATGAACAGAGAATATCTGTTCTTTTTCTACAATAAAGTTAAAAGCTGAAAAAAGTGGGAAAATTCCAGTACATCCTTTAATAGCATTGAACATTCACTGCTACACTCACAAAAGTGATGTCtgaaaaattgttgcaaacaatttataaatgttgaatttaaacaaacttgtCAAAATTTATCAGTTTAAATGCagcgcaaataaattgtttacaaccactcaacttaaaaaaattaagtaaatccaaggacTGATCCTTGAATAATTGTTTTCAGTGTAGTAAACGTACTTACTTTTCTTACTGATACTAAAATACAGCTCTGGGAAAGAATTAATTTTCTGAATTGACCATTACAGCATTTTGAATAAATTGTTAATTTGCGTTTTATTCTATAAACTATGAGAAGAGTCTTCAGTTTTTTAGAAGTTAAATTATAATGTAGATAGGCCAAAagtcaatatataaaaaaaggatTGTGTAGTTTCTACCCCAGAGCTACattcagttttagttttatatttatttatttatttgtaatgtgttttttttttttttttttttacctcctaAACTCTGAGACTCAGTACCGGGTCTGTGATGTCATTTACTTCTACATTCTTTCAATTTTAAAGCTCCatactgcccccccccccccccctaagtGGTTAACCTCTTAAAAATAGAAGCTATTTTGGGGTTTCCGCCAGGATTTTGCCAACCCAAGTTCAAAAGCTTcctaaatccacatgcagaggtgtaaatgcaaatgtttggtatcattttaaagaaaaccctttgagtttttataaaacactgttgaaagtgattaaaataattgtatatgttgtctgtgtcatAATAAATACCTCAAAAAAAGAGGCATTGCTGagttgctgtaattaattaaGTTGGTCAG

Function

GO:

id name namespace
GO:0071800 podosome assembly biological_process
GO:0097320 plasma membrane tubulation biological_process
GO:0006911 phagocytosis, engulfment biological_process
GO:0005886 plasma membrane cellular_component
GO:0002102 podosome cellular_component
GO:0001891 phagocytic cup cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005543 phospholipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5598 Predicted to enable phospholipid binding activity. Predicted to be involved in phagocytosis, engulfment; plasma membrane tubulation; and podosome assembly. Predicted to be located in cytoplasm. Predicted to be active in plasma membrane and podosome. Predicted to colocalize with phagocytic cup. Orthologous to human BIN2 (bridging integrator 2).

Ensembl:

ensembl_id ENSDART00000184798

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062888 lncRNA upstream 289789 38518219 ~ 38590172 (+) True XLOC_032188
TCONS_00064905 lncRNA upstream 519518 38358681 ~ 38360443 (+) True XLOC_032185
TCONS_00062878 lncRNA upstream 1154036 37725309 ~ 37725925 (+) True XLOC_032181
TCONS_00064904 lncRNA upstream 1403860 37470116 ~ 37476101 (+) False XLOC_032178
TCONS_00064906 lncRNA downstream 59115 38953481 ~ 38955126 (+) True XLOC_032194
TCONS_00062917 lncRNA downstream 475969 39370335 ~ 39378734 (+) False XLOC_032204
TCONS_00064909 lncRNA downstream 638112 39532478 ~ 39538006 (+) False XLOC_032208
TCONS_00064908 lncRNA downstream 638112 39532478 ~ 39538006 (+) False XLOC_032208
TCONS_00064907 lncRNA downstream 638112 39532478 ~ 39538006 (+) False XLOC_032208
TCONS_00062895 mRNA upstream 18612 38845697 ~ 38861349 (+) False XLOC_032191
TCONS_00062896 mRNA upstream 29504 38845848 ~ 38850457 (+) True XLOC_032191
TCONS_00062891 mRNA upstream 89897 38773376 ~ 38790064 (+) False XLOC_032190
TCONS_00062892 mRNA upstream 89906 38773417 ~ 38790055 (+) False XLOC_032190
TCONS_00062890 mRNA upstream 149431 38626926 ~ 38730530 (+) True XLOC_032189
TCONS_00062901 mRNA downstream 1792 38896158 ~ 38902498 (+) False XLOC_032193
TCONS_00062902 mRNA downstream 1874 38896240 ~ 38899167 (+) True XLOC_032193
TCONS_00062903 mRNA downstream 191603 39085969 ~ 39091330 (+) True XLOC_032195
TCONS_00062904 mRNA downstream 204031 39098397 ~ 39105480 (+) False XLOC_032196
TCONS_00062905 mRNA downstream 204107 39098473 ~ 39104152 (+) True XLOC_032196
TCONS_00062894 other upstream 21659 38845676 ~ 38858302 (+) False XLOC_032191
TCONS_00062893 other upstream 97803 38773418 ~ 38782158 (+) True XLOC_032190
TCONS_00062884 other upstream 502750 38377091 ~ 38377211 (+) True XLOC_032186
TCONS_00062883 other upstream 792350 38087495 ~ 38087611 (+) True XLOC_032184
TCONS_00062877 other upstream 1162851 37715272 ~ 37717110 (+) False XLOC_032181
TCONS_00062919 other downstream 476254 39370620 ~ 39371875 (+) True XLOC_032204
TCONS_00062936 other downstream 1149249 40043615 ~ 40049445 (+) True XLOC_032217
TCONS_00062945 other downstream 1651499 40545865 ~ 40546975 (+) False XLOC_032225
TCONS_00062987 other downstream 2300321 41194687 ~ 41194801 (+) True XLOC_032251
TCONS_00062995 other downstream 2560425 41454791 ~ 41454873 (+) True XLOC_032256

Expression Profile

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