RNA id: TCONS_00062900


Basic Information

Item Value
RNA id TCONS_00062900
length 818
lncRNA type retained_intron
GC content 0.39
exon number 5
gene id XLOC_032192
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 38879961 ~ 38894366 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGATCGCCTGTGTGCCAACTAATCTGAGCTGAAGATGGCTGACGGAAAACTAGGTACCAACATTGGGGGTAACATTGGCGCGGGagctggcatcctggccaaacgCTTTCAGAAATCAATGAATCGAGCACAAGAGAAGGTCCTGCAGAAGCTGGGAAAAACCATGGAGACCAAAGATGAGCAGTTTGAGGAGTGCTCTGCCAATCTGAACAAACAGCAGACAGATGGCATCAGACTCTACAAGGACGTTAAAGCTTACTACAATGCGGTTAAAGTGATGCATGAATCATCCAAACGGCTGTCCCAGACTCTTAAAGATATCTATGAACCAGACTGGCATGGTGTAGAAGATCTTACTGTCATAATGGAGAGTGAGGATCTTTTGTGGAATGACTACGAGGAGAAGCTAAACGATCAAGTCGTTCGAACAATGGAGAACTACACCGCACAGTTCCAAGATGTCAAAGTTTGTAAAGCTGCCAAATTACAAACCTTCATTAGTTCCAGCTTTAATTTAGAGTGATAATATCAGATGCCAATGCCATGGTACAatctgtaatatttaataattatttattgaagtGCTATGGCACTTCTAAATCAACAGTtaaatatggagccagatcagtctcaaaaatcatacatttacaaaataaaatgcatacatgcacagcacaattcacatttaaaaagaCAATTGGTAAATGCACAAACCCAATCTGTAAAATCAAAACTCGATTCaataatacacaaatccaactcgaaaatttaaaacatgattcaaaaatagacaaatccaattaaaaaattaaaaaca

Function

GO:

id name namespace
GO:0071800 podosome assembly biological_process
GO:0097320 plasma membrane tubulation biological_process
GO:0006911 phagocytosis, engulfment biological_process
GO:0005886 plasma membrane cellular_component
GO:0002102 podosome cellular_component
GO:0001891 phagocytic cup cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005543 phospholipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5598 Predicted to enable phospholipid binding activity. Predicted to be involved in phagocytosis, engulfment; plasma membrane tubulation; and podosome assembly. Predicted to be located in cytoplasm. Predicted to be active in plasma membrane and podosome. Predicted to colocalize with phagocytic cup. Orthologous to human BIN2 (bridging integrator 2).

Ensembl:

ensembl_id ENSDART00000132798

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062888 lncRNA upstream 290270 38518219 ~ 38590172 (+) True XLOC_032188
TCONS_00064905 lncRNA upstream 519999 38358681 ~ 38360443 (+) True XLOC_032185
TCONS_00062878 lncRNA upstream 1154517 37725309 ~ 37725925 (+) True XLOC_032181
TCONS_00064904 lncRNA upstream 1404341 37470116 ~ 37476101 (+) False XLOC_032178
TCONS_00062868 lncRNA upstream 1404341 37474977 ~ 37476101 (+) True XLOC_032178
TCONS_00064906 lncRNA downstream 67943 38953481 ~ 38955126 (+) True XLOC_032194
TCONS_00062917 lncRNA downstream 484797 39370335 ~ 39378734 (+) False XLOC_032204
TCONS_00064909 lncRNA downstream 646940 39532478 ~ 39538006 (+) False XLOC_032208
TCONS_00064908 lncRNA downstream 646940 39532478 ~ 39538006 (+) False XLOC_032208
TCONS_00064907 lncRNA downstream 646940 39532478 ~ 39538006 (+) False XLOC_032208
TCONS_00062895 mRNA upstream 19093 38845697 ~ 38861349 (+) False XLOC_032191
TCONS_00062896 mRNA upstream 29985 38845848 ~ 38850457 (+) True XLOC_032191
TCONS_00062891 mRNA upstream 90378 38773376 ~ 38790064 (+) False XLOC_032190
TCONS_00062892 mRNA upstream 90387 38773417 ~ 38790055 (+) False XLOC_032190
TCONS_00062890 mRNA upstream 149912 38626926 ~ 38730530 (+) True XLOC_032189
TCONS_00062901 mRNA downstream 10620 38896158 ~ 38902498 (+) False XLOC_032193
TCONS_00062902 mRNA downstream 10702 38896240 ~ 38899167 (+) True XLOC_032193
TCONS_00062903 mRNA downstream 200431 39085969 ~ 39091330 (+) True XLOC_032195
TCONS_00062904 mRNA downstream 212859 39098397 ~ 39105480 (+) False XLOC_032196
TCONS_00062905 mRNA downstream 212935 39098473 ~ 39104152 (+) True XLOC_032196
TCONS_00062894 other upstream 22140 38845676 ~ 38858302 (+) False XLOC_032191
TCONS_00062893 other upstream 98284 38773418 ~ 38782158 (+) True XLOC_032190
TCONS_00062884 other upstream 503231 38377091 ~ 38377211 (+) True XLOC_032186
TCONS_00062883 other upstream 792831 38087495 ~ 38087611 (+) True XLOC_032184
TCONS_00062877 other upstream 1163332 37715272 ~ 37717110 (+) False XLOC_032181
TCONS_00062919 other downstream 485082 39370620 ~ 39371875 (+) True XLOC_032204
TCONS_00062936 other downstream 1158077 40043615 ~ 40049445 (+) True XLOC_032217
TCONS_00062945 other downstream 1660327 40545865 ~ 40546975 (+) False XLOC_032225
TCONS_00062987 other downstream 2309149 41194687 ~ 41194801 (+) True XLOC_032251
TCONS_00062995 other downstream 2569253 41454791 ~ 41454873 (+) True XLOC_032256

Expression Profile

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