RNA id: TCONS_00062925



Basic Information


Item Value
RNA id TCONS_00062925
length 543
lncRNA type antisense
GC content 0.48
exon number 2
gene id XLOC_032210
representative True

Chromosome Information


Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 39700200 ~ 39717558 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CTTGGACAGCCAGTTCCACCAGCTCCACTATCCGCTCCTGAAGGCCAGCATCCACAGCGCCGTTGCCCAGCCGCTGGTTGCAGGCTCTGATGATACGATCACACATTGTGCGACCATAAGGACCCAAGCCACCATCCACATGTTTCTACAGCAAAAGTCATAAAATAAACGCTTCAGCATTGTGCACGACGGCAGCCTGCATTATAGCATCCAGACCAGCCTCAGGAGAGTCCAGGTTGCCAGAGATGTTCTGTTTACTCACCTCCCGTTCAAACTCTCTGCCATCACTCGTCAGTGGCAGGACATTCTGGAACATGAACGCTTTCTGGCAAGTGTTTATGCGATTGGGACAGGGGTTCTTACGTCTCGGTGGCAGCTGACTGACATACGGCAACATCTCCTTATCAACAAAAGACCCGAAACCTGAAAGTGGAGAAAGGTGTAAGCAAGAATAACTCAAATATAGTTCTGATTAAATTACTGCAGGTTCTTTAAAGGAGCTGTATGTATGTCACGTTTTAGAGTCAATGTCTGAAcagtttg

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000170247

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00062924 lncRNA upstream 32628 39666347 ~ 39667572 (+) True XLOC_032209
TCONS_00064907 lncRNA upstream 162194 39532478 ~ 39538006 (+) False XLOC_032208
TCONS_00064912 lncRNA downstream 156966 39874524 ~ 39882227 (+) True XLOC_032213
TCONS_00064913 lncRNA downstream 287037 40004595 ~ 40017137 (+) True XLOC_032216
TCONS_00062939 lncRNA downstream 731076 40448634 ~ 40451840 (+) True XLOC_032220
TCONS_00062941 lncRNA downstream 758153 40475711 ~ 40481661 (+) False XLOC_032222
TCONS_00062942 lncRNA downstream 759816 40477374 ~ 40481777 (+) True XLOC_032222
TCONS_00062923 mRNA upstream 158752 39536596 ~ 39541448 (+) False XLOC_032208
TCONS_00062922 mRNA upstream 191825 39506043 ~ 39508375 (+) True XLOC_032207
TCONS_00062921 mRNA upstream 196819 39499623 ~ 39503381 (+) True XLOC_032206
TCONS_00062920 mRNA upstream 202226 39493864 ~ 39497974 (+) True XLOC_032205
TCONS_00062918 mRNA upstream 324678 39370615 ~ 39375522 (+) False XLOC_032204
TCONS_00062926 mRNA downstream 94917 39812475 ~ 39831089 (+) True XLOC_032211
TCONS_00062927 mRNA downstream 118916 39836474 ~ 39866670 (+) True XLOC_032212
TCONS_00062928 mRNA downstream 187463 39905021 ~ 39912440 (+) True XLOC_032214
TCONS_00062929 mRNA downstream 205494 39923052 ~ 39991554 (+) False XLOC_032215
TCONS_00062933 mRNA downstream 213267 39930825 ~ 39990998 (+) False XLOC_032215
TCONS_00062919 other upstream 328325 39370620 ~ 39371875 (+) True XLOC_032204
TCONS_00062894 other upstream 841898 38845676 ~ 38858302 (+) False XLOC_032191
TCONS_00062893 other upstream 918042 38773418 ~ 38782158 (+) True XLOC_032190
TCONS_00062884 other upstream 1322989 38377091 ~ 38377211 (+) True XLOC_032186
TCONS_00062883 other upstream 1612589 38087495 ~ 38087611 (+) True XLOC_032184
TCONS_00062936 other downstream 326057 40043615 ~ 40049445 (+) True XLOC_032217
TCONS_00062945 other downstream 828307 40545865 ~ 40546975 (+) False XLOC_032225
TCONS_00062987 other downstream 1477129 41194687 ~ 41194801 (+) True XLOC_032251
TCONS_00062995 other downstream 1737233 41454791 ~ 41454873 (+) True XLOC_032256
TCONS_00062996 other downstream 1746227 41463785 ~ 41493470 (+) False XLOC_032257

Expression Profile


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