RNA id: TCONS_00064912


Basic Information

Item Value
RNA id TCONS_00064912
length 1576
lncRNA type antisense_over
GC content 0.29
exon number 2
gene id XLOC_032213
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 39874524 ~ 39882227 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGGAAAATAACGGACAAAAATCAATGTGTCTGAATTCTTCAACCGCTCATGACCATCCTTACGAGTTCTGtagaagagaaataaaaaaagaattagtGAGACAGTAATCCAAGAAAATTCAACCTGTTATATCAACAAACTGGCCCCTTGGAATTATAGGCTTCTGCCTGCATTCTAAGCTGTTTTACATATTGAGATTTTGCACAAAAATTATATTAGGAACAAATCTTGCTTTTCACTAATATTATGTTTGATAGGATAGGACACTATTTGGCCGAATACAACCATTtgaaatctggaatctgagggttaacaaaaaaaaaaaaatctaaatattgattaaaaagcccctttaaagttgtccaaattaacttCTAAACAATACATATTACTAATGAAAAGTTATCAAAATGTTTGATATACATCACAGTAAGGCACTCACAAAACCTTTACTTTATATTCTAATAAATTTAAGCATAACAGAAGAATCAATCATTTTCCcttatacaatgtattttttgctATTCCTACTAATTtacatgtgcaacatatttttTGGTCCAGAGTCTTTAAAAAACCCTCTCAAATTTGTAAATGGGGATTTTTGTAActtgtcaaataataataataataataattagcacaTTCTGCTTGGAATAATGATGTTCTATCTTACAAAATATTAATTGAAGcattagttaaaggtgcagtactgaagtttgacacccagtgggggaactaggtattgcattactgattcaaaacaaatgatgacagcatgttatattttacttgatatttttcaagatactattactagtattcagcttaaagtgcaatctaaaggtttaactagattaattaggcaggttagtgtaattaagcaagtcattgtataaagatggtttgttctgtagacaagacgataaaaaaattgcataagagtgctaataatattgaccttaaaatcaatattttctccaagttttttttttttttttttggcttttattatagctgaaataaaacaaataagactttctccagaagaaaaaatattatagtaaatactgtgaaaaattccttgctccataaacataattttgggaaatatatgaaaaaaaagcaattcacactattatttttattaaaactatatttgcATATGTGATGCATATTTTAGTGCACCTTGtgtgaaatttttttatttttatttatttttttttcatttttaatacctTTATTCAATAAACTTAACCGAACATCACTCATCAGGGCTCAAAATCAACTTTTTTGCTtagtagcactggtgctcctaactttaaaaatgtggtCGCACCAGCCAAATTTAGTCACACCCACCAAGATTTATGTGCactgttactacaagttttatattaacagatttattgcatttgaaatcatcCTGGCctttaaatgaaggattatataGAACCTCTCGCACTCAAAATTTGTAGATTCAGTGACACTGTTAAAAACTCcatcacacagactttaaagtgAATGGCTTTAAGAGTCTTATTCACTTTTCGAAGAGTGTATCATTAATCAgct

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062925 lncRNA upstream 156966 39700200 ~ 39717558 (+) True XLOC_032210
TCONS_00062924 lncRNA upstream 206952 39666347 ~ 39667572 (+) True XLOC_032209
TCONS_00064910 lncRNA upstream 336518 39533494 ~ 39538006 (+) False XLOC_032208
TCONS_00064913 lncRNA downstream 122368 40004595 ~ 40017137 (+) True XLOC_032216
TCONS_00062939 lncRNA downstream 566407 40448634 ~ 40451840 (+) True XLOC_032220
TCONS_00062941 lncRNA downstream 593484 40475711 ~ 40481661 (+) False XLOC_032222
TCONS_00062942 lncRNA downstream 595147 40477374 ~ 40481777 (+) True XLOC_032222
TCONS_00064915 lncRNA downstream 663631 40545858 ~ 40551992 (+) False XLOC_032225
TCONS_00062927 mRNA upstream 7854 39836474 ~ 39866670 (+) True XLOC_032212
TCONS_00062926 mRNA upstream 43435 39812475 ~ 39831089 (+) True XLOC_032211
TCONS_00062923 mRNA upstream 333076 39536596 ~ 39541448 (+) False XLOC_032208
TCONS_00062922 mRNA upstream 366149 39506043 ~ 39508375 (+) True XLOC_032207
TCONS_00062921 mRNA upstream 371143 39499623 ~ 39503381 (+) True XLOC_032206
TCONS_00062928 mRNA downstream 22794 39905021 ~ 39912440 (+) True XLOC_032214
TCONS_00062929 mRNA downstream 40825 39923052 ~ 39991554 (+) False XLOC_032215
TCONS_00062933 mRNA downstream 48598 39930825 ~ 39990998 (+) False XLOC_032215
TCONS_00062934 mRNA downstream 48598 39930825 ~ 39990998 (+) False XLOC_032215
TCONS_00062932 mRNA downstream 48598 39930825 ~ 39990998 (+) False XLOC_032215
TCONS_00062919 other upstream 502649 39370620 ~ 39371875 (+) True XLOC_032204
TCONS_00062894 other upstream 1016222 38845676 ~ 38858302 (+) False XLOC_032191
TCONS_00062893 other upstream 1092366 38773418 ~ 38782158 (+) True XLOC_032190
TCONS_00062884 other upstream 1497313 38377091 ~ 38377211 (+) True XLOC_032186
TCONS_00062883 other upstream 1786913 38087495 ~ 38087611 (+) True XLOC_032184
TCONS_00062936 other downstream 161388 40043615 ~ 40049445 (+) True XLOC_032217
TCONS_00062945 other downstream 663638 40545865 ~ 40546975 (+) False XLOC_032225
TCONS_00062987 other downstream 1312460 41194687 ~ 41194801 (+) True XLOC_032251
TCONS_00062995 other downstream 1572564 41454791 ~ 41454873 (+) True XLOC_032256
TCONS_00062996 other downstream 1581558 41463785 ~ 41493470 (+) False XLOC_032257

Expression Profile

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