Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00062934 |
| length | 2127 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 17 |
| gene id | XLOC_032215 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007117.7 |
| NCBI id | CM002890.2 |
| chromosome length | 60270059 |
| location | 39923052 ~ 39991554 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0070588 | calcium ion transmembrane transport | biological_process |
| GO:0055085 | transmembrane transport | biological_process |
| GO:0006811 | ion transport | biological_process |
| GO:0006816 | calcium ion transport | biological_process |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| GO:0005216 | ion channel activity | molecular_function |
| GO:0005220 | inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity | molecular_function |
| GO:0005262 | calcium channel activity | molecular_function |
| GO:0070679 | inositol 1,4,5 trisphosphate binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-070604-3 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to act upstream of or within calcium ion transmembrane transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in Gillespie syndrome; spinocerebellar ataxia type 15; and spinocerebellar ataxia type 29. Orthologous to human ITPR1 (inositol 1,4,5-trisphosphate receptor type 1). |
| ensembl_id | ENSDART00000190513 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00064912 | lncRNA | upstream | 48598 | 39874524 ~ 39882227 (+) | True | XLOC_032213 |
| TCONS_00062925 | lncRNA | upstream | 213267 | 39700200 ~ 39717558 (+) | True | XLOC_032210 |
| TCONS_00062924 | lncRNA | upstream | 263253 | 39666347 ~ 39667572 (+) | True | XLOC_032209 |
| TCONS_00064676 | lncRNA | upstream | 392819 | 39533555 ~ 39538006 (+) | False | XLOC_032208 |
| TCONS_00064913 | lncRNA | downstream | 13597 | 40004595 ~ 40017137 (+) | True | XLOC_032216 |
| TCONS_00062939 | lncRNA | downstream | 457636 | 40448634 ~ 40451840 (+) | True | XLOC_032220 |
| TCONS_00062941 | lncRNA | downstream | 484713 | 40475711 ~ 40481661 (+) | False | XLOC_032222 |
| TCONS_00062942 | lncRNA | downstream | 486376 | 40477374 ~ 40481777 (+) | True | XLOC_032222 |
| TCONS_00064915 | lncRNA | downstream | 554860 | 40545858 ~ 40551992 (+) | False | XLOC_032225 |
| TCONS_00062928 | mRNA | upstream | 18385 | 39905021 ~ 39912440 (+) | True | XLOC_032214 |
| TCONS_00062927 | mRNA | upstream | 64155 | 39836474 ~ 39866670 (+) | True | XLOC_032212 |
| TCONS_00062926 | mRNA | upstream | 99736 | 39812475 ~ 39831089 (+) | True | XLOC_032211 |
| TCONS_00062923 | mRNA | upstream | 389377 | 39536596 ~ 39541448 (+) | False | XLOC_032208 |
| TCONS_00062922 | mRNA | upstream | 422450 | 39506043 ~ 39508375 (+) | True | XLOC_032207 |
| TCONS_00062937 | mRNA | downstream | 363426 | 40354424 ~ 40405934 (+) | True | XLOC_032218 |
| TCONS_00062938 | mRNA | downstream | 446989 | 40437987 ~ 40439615 (+) | True | XLOC_032219 |
| TCONS_00062940 | mRNA | downstream | 476564 | 40467562 ~ 40470521 (+) | True | XLOC_032221 |
| TCONS_00062943 | mRNA | downstream | 491332 | 40482330 ~ 40499799 (+) | True | XLOC_032223 |
| TCONS_00062944 | mRNA | downstream | 532372 | 40523370 ~ 40544207 (+) | True | XLOC_032224 |
| TCONS_00062919 | other | upstream | 558950 | 39370620 ~ 39371875 (+) | True | XLOC_032204 |
| TCONS_00062894 | other | upstream | 1072523 | 38845676 ~ 38858302 (+) | False | XLOC_032191 |
| TCONS_00062893 | other | upstream | 1148667 | 38773418 ~ 38782158 (+) | True | XLOC_032190 |
| TCONS_00062884 | other | upstream | 1553614 | 38377091 ~ 38377211 (+) | True | XLOC_032186 |
| TCONS_00062883 | other | upstream | 1843214 | 38087495 ~ 38087611 (+) | True | XLOC_032184 |
| TCONS_00062936 | other | downstream | 52617 | 40043615 ~ 40049445 (+) | True | XLOC_032217 |
| TCONS_00062945 | other | downstream | 554867 | 40545865 ~ 40546975 (+) | False | XLOC_032225 |
| TCONS_00062987 | other | downstream | 1203689 | 41194687 ~ 41194801 (+) | True | XLOC_032251 |
| TCONS_00062995 | other | downstream | 1463793 | 41454791 ~ 41454873 (+) | True | XLOC_032256 |
| TCONS_00062996 | other | downstream | 1472787 | 41463785 ~ 41493470 (+) | False | XLOC_032257 |
