RNA id: TCONS_00062932


Basic Information

Item Value
RNA id TCONS_00062932
length 8238
RNA type mRNA
GC content 0.49
exon number 59
gene id XLOC_032215
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 39923052 ~ 39991554 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGTGGACAAATTGTCTAGTTTCCTGCACATTGGGGACGTTTGTTCCCTTTATGCTGAAGGCTCTACTAGTGGCTTCATCAGCACTCTGGGgTTGGTTGATGACCGATGTGTTGTTCAACCAGATGCCGGAGACCTGAATAACCCACCTAAAAAGTTTCGGGaCTGTCTGTTCAGACTGTGTCCCATGAACAGATATTCGGCACAGAAACAGTTCTGGAAAGCTGCCAAACCTGGAGGAACTAGCACCACAGATACTGTCCTGCTTAACAAACTCCATCATGCTGCTGATTTAGAGAAGAAACAAAATGATTCTGAGAACAAAAAGCTGCTTGGAACCGTCATTCAGTATGGCAATGTCATCCAGCTTCTCCATCTGAAGAGTAATAAATATCTGACGGTGAACAAGCGTTTGCCGGCTCTTCTTGAGAAGAATGCCATGCGTGTGACGCTGGACGCTGCAGGGAATGAAGGCTCGTGGTTTTACATCCAGCCCTTCTATAAGCTGCGCTCTATAGGGGATAATGTGGTCATTGGAGATAAGGTCGTGTTAAACCCTGTCAATGCCGGACAGCCGCTGCACGCCAGCAGCCATCAGCTTGTGGATAATCCAGGCTGCAATGaaGTGAATTCAGTGAACTGCACCACCAGTTGGAAAATCGTTCTCTTCATGAAATGGAGCGACAACCAGGAGATTGTCTTGAAAGGAGGTGACGTGGTGAGGCTGTTTCATGCAGAGCAGGAGAAGTTTCTGACATGTGATGAGCATCGGAAAAAGCAGTATGTGTTTCTGCGTACCACCGGACGCCAGTCTGCAACCTCCGCCACTAGTAGCAAAGCACTCTGGGAGGTGGAGGTGGTTCAGCATGATCCCTGCCGAGGTGGAGCCGGCTACTGGAACAGCCTCTTTAGGTTTAAACACTTAGCCACCGGCCATTACCTTGCTGCAGAGGTAAATCCAGACTATGAAGAAGAATGCCTGGAGTCCCGCTCctctATGGATTCGGAGCATGAAGTGATTCGGGCTCGTGCACGTAACCCTCAGGATAAGGTGATGTACACACTGGTGTCTGTTCCTGATGGAAATGACATATCCTCCATCTTTGAGCTTGACCCTACAACTTTGAGGGGCGGAGACTCACTTGTGCCAAGAAACTCGTATGTGAGGCTCAGGCATCTCTGCACCAACACGTGGGTCCACAGCACCAACCAGCCAATAGATAAAGAGGAAGAGAAACCGGTCATGCTCAGAATAGGAACGTCTCCTCTGAAGGAAGATAAAGAGGCGTTTGCTATAGTACCAGTCTCTCCAGCTGAGGTTCGAGATCTGGATTTTGCTAATGATGCTAGTAAAGTGTTGGCTTCCATTGCTGCCAAACTGGAGAAGGGCACCATTACCCAGAATGAGAGGAGGTCAGTGACGAAGCTGTTGGAGGATCTGGTGTATTTTGTGGTGGACATACCCAGCAGTGCTCAAGATGTGCTGGAGATCACAGTCAACAAACCCAACAGAGAGCGACAGAAACTCATGAGAGAGCAGAACATTCTTAAACAGATCTTCAAGCTGCTGCAGGCGCCATTTACAGACAGCGGGGACGGCCCTATGTTGCGATTAGAAGAGCTCGCAGACCAGCGTCATGCACCCTTTCGACACATTTGCAGACTCTGTTACAGAGTCCTACGTTACTCACAACAGGACTATCGCAAAAATCAGGAGTACATAGCAAAGCAGTTCCGCTTCATGCAGAAGCAGATAGGATATGATGTGCTGGCTGAAGACACAATTACAGCCCTTCTGCACAACAACAGGAAGCTCCTAGAGAAACACATCACAGCAGCTGAAATAGATACCTTTGTCAGTCTGGTCCGCAAGAACAGAGAGCCCAGATTTCTGGATTACTTGTCAGATCTGTGTGTGTCGATGAATAAATCCATCCCGGTCACTCAAGAGCTCATCTGTAATGCTGTGCTGGACCCAGCCAATGCAGACATTCTCATCGAAACCAAGCTTGTGTTGTCACGGTTTGAGGTGGCAGGAACGGTGTTGGGTGAAGGTgcggaggaggaagaggaggatgaagaggaggTCTGGCTGTTCTGGAAGGACAGTGGAGGAGAGGTGAAGAGTAAAAGCATACGAGAGCTTGCACAGGACGCAAAAGATGGACATACAGAGGACCAGGAAGTCATCAATTATTACAGATATCAGCTGAATTTGTTTGCTCGGATGTGTCTGGATCGACAGTATCTTGCGATTAACAAGATATCAGCACAGCTGGATGTGGATCTGATTCTGCGCTGCATGTCAGATGAAGATTTGCCCTTTGACCTCAGAGCATCGTTCTGCCGCATGATGCTGCACATGCATGTAGACCGTGACCCTCAGGAGCAGGTCACCCCGGTCAAATATGCTCGACTGTGGTCTGAAATCCCATCACAAATTTCCATTGATGATTATGATAATGATGGGACGTCAAGTGATGAAGTGAAAGAGCGCTTCTCTCAGACGATGGAGTTTGTGGAGAATTACCTGAGGGATGTTGTCTGCCAGAGTTTCCCGTTCTCTGATAAGGAGAAAAACAAACTCACTTTTGAGGTGGTGAACCTGGCAAGAAACCTGATCTATTTTGGTTTCTATAACTTCAGTGATCTGCTAAGGTTAACAAAAATCCTATTGGCAATCCTGGACTGTGTCCACATAAGCACTCCCTTCCACATCAAGCTGGATAGAGAACCCGGTAAAGGAAGTAACGTGATGCGCTCCATCCATGGGGTGGGAGAGCTGATGACACAGGTGGTGTTGAGGGGTGGGGGATTTCTGCCAGCCTCCAGCCACAATCCTCCTGACAGAGACGAAGTGAAAGCACAAAGTGAACCTCAGAAACAGGACATACTGGTGATGGACACTAAACTCAAGATCATCGAGATCCTGCAGTTTATTCTGAATGTGCGGTTGGACTACAGGATCTCCTGCCTCCTCTGTATCTTTAAGACAGAGTTTGATGAAAGTAACTCTCAAAGTGAACCATCTTTAAGCCCAGAATCTCCTGCCAGCGTTCAAGGTGCGCTAGACTTTGAGCACATTGAAGAGCAGGCGGAGGGTATTTTTGGAGGAAGTGAAGAGAACACCCCGCTGGATCTTGATGATCATGGTGGACGGACATTTCTGAGGGTCCTGCTTCACCTGACCATGCATGACTATCCTCCGCTGGTATCTCGAGCTCTTCACCTGCTCTTCAGACACTTTAGCCAACGCCAGGAGGTCCTACAGGCCTTCAAACAggttCAGCTCCTGGTGACCAGTCAGGATGTGGAAAACTATAAACAGATCAAGTCAGATTTGGACCAGCTGAGGTCAATAGTAGAGAAATCAGAGTTGTGGGTGTATAAGAGACAAGGCTCAGACTCAGGACTGGATGCTGGAGAAGTCACCCCTGAAGCCCACCACAAGGTCAGGATTAGATCAAACAAACCCAAAGTGGAAAGTACCAGCAGCTCGAACTACAGAGTCGTGAAAGAGATCCTGCTGAGGCTGAGCAAACTGTGTGTTTTGGAGGGCATCTCTGGCAAGAAGAATAAGAAACAGCAGCAGCGGCTCCTCAGGAACATGGGAGCTCACAGTGTGGTCCTCGAACTGTTGCAAATCCCTTATGAGAAGGGGGAGGATGTCCAGATGCAGGAGATCATGACCTTAGCACATCAGTTCCTTCAAAACTTCTGTGCTGGAAATCAGCAGAACCAGGCACTTCTACACAAACACATCAACCTGTTCCTCAACCCTGGGATCCTGGAGGCGGTGACCATGCAGCATATCTTCATGAATAATTTCCAGTTGTGTAGTGAGATTAATGAGCGGGTCGTGCAGCATTTTGTGCACTGCATCGAGACACACGGCCGCAGCGTGCACTACCTCAAGTTCCTGCAGACCATTGTCAAGGCAGAGAACAAGTTCATCAAGAAATGCCAAGACATCGTCATGGCTGAGctgGTGACTGCAGGTGAGGATGTGCTGGTGTTCTATAATGACCGGGCGTCTTTTCAGTCATTGGTTCAGATGATGCGTCTTGAGCGGGAACGACTTGATGAGAGCAGTGCACTCAGGTATCACATTCACCTGGTGGAGTTGCTGGCTGTGTGCACTGAAGGCAAGAACGTCTACACTGAGATCAAATGCAACTCGCTGCTCCCTCTCGATGATATTGTACGTGTGGTCACACATGAGGACTGCATCCCTGAGGTGAAGATGGCCTACGTGAACTTCCTGAATCACTGTTATGTTGATACAGAGGTTGAGATGAAGGAGATCTACACCAGCAATCACATGTGGAAACTTTTTGATGATTTTCTGGTGGACGTCTGCAGAGTGTGCAATAACACAAGTGACCGTAAACACGCTGACACAGTTCTGGAGAGATACGTTACAGAGACCATAATGAGCATCGTCACCACCTTTTTCAGCTCACCATTCTCAGACCAGAGCACAAGTTTGCAGACCCGGCAGCCGGTGTTTGTGCAGCTGCTGCAGGGAGTGTTTCGTGTATATCACTGCAACTGGCTTCTCCCAGGTCAGAAGGGGAATGTGGAAGCCTGCATCAAAGTGCTGAGTGACGTGGGTAAGAGCAGAGCCATAGCCATTCCTGTGGATCTGGACTGTCAGGTGAATAATCTGTTCATGAAGTCCAACAACATTGTGCAGAAAACAGCCCTCAGCTGGAGACTCTCTGTCCGTAACGCGACTCGGAGAGACTCTGTTCTGACCACCTCTCGAGACTATCGCAACATCATTGAAAGACTACAGGATATAGTGTCTGCATTGGAGGAGCGGTTGAGGCCTCTGGTTCAGGCTGAGTTGTCAGTGTTGGTGGATGTTCTCCATCGCCCAGAGCTGCTGTTTCCAGAGCACACTGAAGCCCACCGCAAGTGTGAGAGTGGAGGCTTCATCTGCAAGTTGATAAAACACACTAAGCAGCTTCTAGAAGAAAACGAAGAGAGGCTTTGCATCAAAGTCCTTCAGACACTCCGAGAGATGATGACCAAAGACAGAGGATATGGAGAGAAGAGATTGCTGCATGATGATACTAATTGTGTGTCAGTGTTGTGTTGTCCGCTCTGCTCACTCACTCAGGTGGTGGATATCAGTCTGCCACCCAAACAGCAGGAGGATCGGCAGAGGGGGGAGGCCCTTCGGCAGCTGCTCGTCAATCGTTACTATGGCTTCAGGAGTGGTGGGCGgagagaaagtctgacctcgttTGGTAACTCCACCCTAACTCCTGTCGGGCCAATCAAGAGCCAGCCAGGTAAGTACATTGTAACCTCTGGGAGCATTTGGGGGTTGAGCAGGGCTGAGATGTCATTAATGGAGGTGCAGTGTCATCTAGACCGTGAAGGGGCATCGGATCTTGTCATTGATCTCATCATGAACACTACCAGCGACCGCGTCTTCCATGAAAGCATTCTGTTGGCCATCGCACTGTTGGAGGGCGGAAACACCATCATACAGCATTCCTTCTTCAAACGTTTAACAGAAGACAAAAATTCAGAGAAGTTTTTCAGGGTGTTTTATGACAGAATGAAAGTGGCTCAGGTGGAGATCAAAGCCACGGTTACTGTCAACACTAGTGACCTCGGCAACAAGCGGCGTGACGACAACACTCCAGACAAAGATACTCCACAACGCCGCAGAGGTAAAGACTCCGGTGTGGTGGTGACAGATGATGCTCGTGAGCAGCTGTTGGAGGCTTCAGCTGCGACTAAGAAGGCCTTTGGTTCATATCGTCGAGATGCTGATCCCGAGGAGACGTTTGGCACGGCTGATGGAGATAAAGGAGGTGGAGATAAAGGCACAGAGCAGGGCGAGATGAGCCCTGTCATCCTCATAATGCAGCCAATCCTGCGCTTCCTGCAGCTGCTGTGCGAAAACCACAATCGAGACCTGCAGAATTTTCTGCGCTGtcagaacaataaaaacaactaTAATCTGGTGTGTGAGACGCTGCAGTTCCTGGACTGTATCTGTGGCAGCACAACAGGAGGCCTGGGGCTGTTAGGACTCTACATCAACCAGCATAACGTAGCGCTCATTAATCAGACTGTAGAGAGCCTCACTGAATACTGTCAAGGTCCCTGCCATGACAATCAGAATTGCATTGCCACCCATGAGTCTAATGGCATCGACATCATTATTGCACTGATTCTGAATGATATTAATCCACTGGGCAGGAAGAGAATGGATCTGGTTCTAGAACTAAAGAATAATGCATCTAAGCTGCTGCTGGCCATCATGGAGAGCCGTCATGACAGTGAGAATGCAGAAAGAATTCTGTACAACATGAGACCAAAAGAACTAGTGGAGGTGATGAAAATGGCCTACCAGCAGGGGGAGGCAGAGTTTGAGGATGAGGAACAGGAGAATGGAGAGGATCATGCAGCATCGCCTCGCAATGTTGGACACAACATCTATATTCTTGCACATCAGCTGTCGCGTCACAATAAGGAATTGCAAATACTACTGAAACCAGGTGGAGAGGACCAGGCCCTGGAGTATTACACAAAACACACCTCACAGATAGAGATAGTTCGACAGGATCGCACTATGGAACAGATTGTGTTTCCTGTACCAAATATCTGCTCTTTTCTGACAAATGAGTCCAAGCTGCGTGTGTACTATGGTACAGAGAGAGACGAGCAAGGcagtaaaataaatgacttctTCTTGCATGCAGACGACCTCTTTAATGAAATGAGGTGGCAGAAAAAACTAAGAGCTCAGCCAGTGCTGTACTGGTGCAGCAGGAACATGTCGTTTTGGAGTAACGTTTCCTTTAATCTGGCGGTGCTCATTAATTTGCTGGTGGCATTTTTCTACCCTCTGGATGGAGTGAGCGAAAGCCAGCTGGAACCTTCTCTGTCTCTGTTGCTGTGGGTTTGTTTGTTGGGCTCACTGGGCTTCGTGTTGATGTCCCCGAGGCCAAATGCAGTGCGGGTGCTGGTCATCTCCACTGTCCTGCAGTTGGGCTTCTCTGTAGGGCTGCAGCACATGCTCACACTCCTGGGAGCTTTCAATGTTTGTAATAAGATCGTGTTCATGCTGAGCTTTGTGGGTAACCGTGGGTCATTCACCCGGGGTTATCGGGTGATGGTCATGGATAGAGAGTTCCTGTTTCATCTGCTGTACCTTCTCATCTGCATACTGGGCCTTTTTGGACACGTCTTCTTTTACAGTCTTCTGtTGTTTGACCTGGTGAACCGGGAAGAGACTCTTCTGAACGTCATCAAGAGTGTGACTCGAAACGGCCGCTCCATCGTCTTGACCGCAGTGCTGGGCCTCATCCTGGTCTACCTCTTTTCTATTGTTGGATATATGTTTTTCAAAGATGACTTCATCCTGGAGGTGAACCGCATCTCCAACGGCACTCtggccaaggctcaaaccagcgaccttcttgctgtgaggcgattgtttactattattattaattcttgcATATTAATACTGAAATGCCATAAGATTCACTGCCTCAATCCAActgattgtgtgtgttttatagatGACGTGGAGCGCGCGTGTGATTCTCTATGGATGTGTATGATCACTGTACTCAGTCATGGCCTCAGGAGCGGTGGAGGAGTTGGAGATGTCCTGCGCAAACCGTCTAAAGAGgaGCGTCTGTTCGCCGCACGGGTGGTGTACGATCTCCTGTTCTTCTTCCTGGTGATCATCATTGTGTTGAATCTGATCTTCGGTGTGATCATTGACACATTTGCAGATCTGAGAAGCGAGAAGCAGAGAAAAGAGGAGATCTTGAAGACCACATGCTTCATCTGTGGTCTGGAGAGAGATAAGTTTGATAATAAAACGGTGACGTTTGAAGAGCACATCAAGGAGGAGCACAACCTGTGGCATTACCTCTTCTTCATAGTGCTGGTGCGGGTCAAAGACTCCACCGAATACACGGGACCCGAGAGCTACGTCGCTCAGATGATCAAGGAGCACAATCTGGACTGGTTTCCTCGTATGAGGGCGATGTCTCTGGTCAGCAGTGATGGAGAAGGTGAACAGAATGAACTGCGCAGCTTACAGGAGAAACTCGAGTCCACAATGAGGCTCGTCTCTAATCTTACCAATCAGCTCACAGAGCTCAAAGAGCAGATGACTGAGCAAAGGAAACACAAGCAGAGGCTCGGTCTGCTGGGAAACCCCGCCCACCTCAACATCAACCCACAGCAGCCAGCATGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006816 calcium ion transport biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005220 inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity molecular_function
GO:0005262 calcium channel activity molecular_function
GO:0070679 inositol 1,4,5 trisphosphate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070604-3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to act upstream of or within calcium ion transmembrane transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in Gillespie syndrome; spinocerebellar ataxia type 15; and spinocerebellar ataxia type 29. Orthologous to human ITPR1 (inositol 1,4,5-trisphosphate receptor type 1).

Ensembl:

ensembl_id ENSDART00000186643

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064912 lncRNA upstream 48598 39874524 ~ 39882227 (+) True XLOC_032213
TCONS_00062925 lncRNA upstream 213267 39700200 ~ 39717558 (+) True XLOC_032210
TCONS_00062924 lncRNA upstream 263253 39666347 ~ 39667572 (+) True XLOC_032209
TCONS_00064676 lncRNA upstream 392819 39533555 ~ 39538006 (+) False XLOC_032208
TCONS_00064913 lncRNA downstream 13597 40004595 ~ 40017137 (+) True XLOC_032216
TCONS_00062939 lncRNA downstream 457636 40448634 ~ 40451840 (+) True XLOC_032220
TCONS_00062941 lncRNA downstream 484713 40475711 ~ 40481661 (+) False XLOC_032222
TCONS_00062942 lncRNA downstream 486376 40477374 ~ 40481777 (+) True XLOC_032222
TCONS_00064915 lncRNA downstream 554860 40545858 ~ 40551992 (+) False XLOC_032225
TCONS_00062928 mRNA upstream 18385 39905021 ~ 39912440 (+) True XLOC_032214
TCONS_00062927 mRNA upstream 64155 39836474 ~ 39866670 (+) True XLOC_032212
TCONS_00062926 mRNA upstream 99736 39812475 ~ 39831089 (+) True XLOC_032211
TCONS_00062923 mRNA upstream 389377 39536596 ~ 39541448 (+) False XLOC_032208
TCONS_00062922 mRNA upstream 422450 39506043 ~ 39508375 (+) True XLOC_032207
TCONS_00062937 mRNA downstream 363426 40354424 ~ 40405934 (+) True XLOC_032218
TCONS_00062938 mRNA downstream 446989 40437987 ~ 40439615 (+) True XLOC_032219
TCONS_00062940 mRNA downstream 476564 40467562 ~ 40470521 (+) True XLOC_032221
TCONS_00062943 mRNA downstream 491332 40482330 ~ 40499799 (+) True XLOC_032223
TCONS_00062944 mRNA downstream 532372 40523370 ~ 40544207 (+) True XLOC_032224
TCONS_00062919 other upstream 558950 39370620 ~ 39371875 (+) True XLOC_032204
TCONS_00062894 other upstream 1072523 38845676 ~ 38858302 (+) False XLOC_032191
TCONS_00062893 other upstream 1148667 38773418 ~ 38782158 (+) True XLOC_032190
TCONS_00062884 other upstream 1553614 38377091 ~ 38377211 (+) True XLOC_032186
TCONS_00062883 other upstream 1843214 38087495 ~ 38087611 (+) True XLOC_032184
TCONS_00062936 other downstream 52617 40043615 ~ 40049445 (+) True XLOC_032217
TCONS_00062945 other downstream 554867 40545865 ~ 40546975 (+) False XLOC_032225
TCONS_00062987 other downstream 1203689 41194687 ~ 41194801 (+) True XLOC_032251
TCONS_00062995 other downstream 1463793 41454791 ~ 41454873 (+) True XLOC_032256
TCONS_00062996 other downstream 1472787 41463785 ~ 41493470 (+) False XLOC_032257