RNA id: TCONS_00062938


Basic Information

Item Value
RNA id TCONS_00062938
length 599
RNA type mRNA
GC content 0.38
exon number 4
gene id XLOC_032219
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40437987 ~ 40439615 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAATAACAGAACGATACCAGATTTCCCAGGATGCCTCTGAGGTGCCGTGCCAGCAGCATGTTTCTGCTCCTGTGTGTTTCTCTTTCCTTGTGTCTCGAGTCTGTGAGCGGTGGCACCAGCTTCCTCAGTCCGACTCAGAAACCGCAGGGTCGAAGGCCACCAAGAGTGGGCAGAAGAGAAGCTGCTGATCCAGAGATACCAGTGATCAAAGAAGACGATCGGTTTatgATGAGCGCTCCATTTGAACTGTCCATGTCTCTGAGCGAAGCTGAATATGAGAAATATGGTCCCGTGCTTCAGAATCTTCTGGAGAATCTTCTTAGAGACTCTTCTTTCGaGTTCTGACAAGAGTCCTACAAAGTTCCTCCTTATAAACAATTGACAATattcacaatttaaaaatgatgtcATTTATgggtttaacaaaataaagaatgataaaaaaattaattctctAATTTCTATGTTCTTTATTCTGTAGCAATTGTTACAATGTTACGTGGGTGATTAAAATCTCTTTATCAGCATTTATTCTCTcagattttaatagtttatttaaaatgctacaaaaaatattacatttaataaattttatttt

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0043009 chordate embryonic development biological_process
GO:0032094 response to food biological_process
GO:0032095 regulation of response to food biological_process
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function
GO:0016608 growth hormone-releasing hormone activity molecular_function

KEGG:

id description
ko04024 cAMP signaling pathway
ko04080 Neuroactive ligand-receptor interaction
ko04935 Growth hormone synthesis, secretion and action

ZFIN:

id description
ZDB-GENE-070622-2 Predicted to enable growth hormone-releasing hormone activity. Acts upstream of or within several processes, including chordate embryonic development; regulation of response to food; and response to food. Predicted to be located in extracellular region. Is expressed in several structures, including diencephalon; digestive system; ghrelin secreting cell; heart; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in diabetic neuropathy; esophagus adenocarcinoma; morbid obesity; obesity; and type 2 diabetes mellitus. Orthologous to human GHRL (ghrelin and obestatin prepropeptide).

Ensembl:

ensembl_id ENSDART00000136487

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064913 lncRNA upstream 420850 40004595 ~ 40017137 (+) True XLOC_032216
TCONS_00064912 lncRNA upstream 555760 39874524 ~ 39882227 (+) True XLOC_032213
TCONS_00062925 lncRNA upstream 720429 39700200 ~ 39717558 (+) True XLOC_032210
TCONS_00062924 lncRNA upstream 770415 39666347 ~ 39667572 (+) True XLOC_032209
TCONS_00064911 lncRNA upstream 899981 39536626 ~ 39538006 (+) True XLOC_032208
TCONS_00062939 lncRNA downstream 9019 40448634 ~ 40451840 (+) True XLOC_032220
TCONS_00062941 lncRNA downstream 36096 40475711 ~ 40481661 (+) False XLOC_032222
TCONS_00062942 lncRNA downstream 37759 40477374 ~ 40481777 (+) True XLOC_032222
TCONS_00064915 lncRNA downstream 106243 40545858 ~ 40551992 (+) False XLOC_032225
TCONS_00064914 lncRNA downstream 106243 40545858 ~ 40551992 (+) False XLOC_032225
TCONS_00062937 mRNA upstream 32053 40354424 ~ 40405934 (+) True XLOC_032218
TCONS_00062929 mRNA upstream 446433 39923052 ~ 39991554 (+) False XLOC_032215
TCONS_00062933 mRNA upstream 446989 39930825 ~ 39990998 (+) False XLOC_032215
TCONS_00062934 mRNA upstream 446989 39930825 ~ 39990998 (+) False XLOC_032215
TCONS_00062932 mRNA upstream 446989 39930825 ~ 39990998 (+) False XLOC_032215
TCONS_00062940 mRNA downstream 27947 40467562 ~ 40470521 (+) True XLOC_032221
TCONS_00062943 mRNA downstream 42715 40482330 ~ 40499799 (+) True XLOC_032223
TCONS_00062944 mRNA downstream 83755 40523370 ~ 40544207 (+) True XLOC_032224
TCONS_00062946 mRNA downstream 114936 40554551 ~ 40563509 (+) False XLOC_032226
TCONS_00062947 mRNA downstream 114995 40554610 ~ 40560065 (+) True XLOC_032226
TCONS_00062936 other upstream 388542 40043615 ~ 40049445 (+) True XLOC_032217
TCONS_00062919 other upstream 1066112 39370620 ~ 39371875 (+) True XLOC_032204
TCONS_00062894 other upstream 1579685 38845676 ~ 38858302 (+) False XLOC_032191
TCONS_00062893 other upstream 1655829 38773418 ~ 38782158 (+) True XLOC_032190
TCONS_00062884 other upstream 2060776 38377091 ~ 38377211 (+) True XLOC_032186
TCONS_00062945 other downstream 106250 40545865 ~ 40546975 (+) False XLOC_032225
TCONS_00062987 other downstream 755072 41194687 ~ 41194801 (+) True XLOC_032251
TCONS_00062995 other downstream 1015176 41454791 ~ 41454873 (+) True XLOC_032256
TCONS_00062996 other downstream 1024170 41463785 ~ 41493470 (+) False XLOC_032257
TCONS_00063008 other downstream 1413757 41853372 ~ 41869189 (+) True XLOC_032262

Expression Profile

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