RNA id: TCONS_00062939


Basic Information

Item Value
RNA id TCONS_00062939
length 1120
lncRNA type antisense
GC content 0.38
exon number 2
gene id XLOC_032220
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40448634 ~ 40451840 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attttgcattttattttgtgatattttataTTTAGGTTGTACCTGTAATCACTAGTTTTTTAAAGAGTGTTTTATATTTGATACTTTTATACTTTCtaaatttttaaatcaaacatttgccctgaagttccaaataaagtgagaaatataATCACATTTGAGTGAGTAAAccactttaaaatgttaatggtCAATGTATATAACattgaatttacagaaatagGTCTGGGCAATATGACAAAAATATCATATCACGATCCTGAAAACATCTCATGTGTCATCTCATCCTGATAACTCCTGATAACTAAGTCATCTAACGTAATCAAGCTAACTTAAGTGAATTCTGAAATTGACTGATTTCGAGGTTCTTCGTGAAAATAGGAACAAAAAAGCTTTAAATTTCAAGTGGAAACGGAAGAGTACAACTAAATCATCTTGTAATGCGTAAACACTAAAGCTCAAACTTAGCAacatatctttttaaaaaataaacggTCAATTGAAGTTAAAAACGGCGTCTCTTTTATAGGTCTACATGTGTATATTTGCATaggtttgtaaacaaaaaaaaaacatgtatacgAAGCAAAACGCGTAAATCAGTAGTCATATGTTATCTAATGTTACAGATGCTAATATTTAGCAGAAAGCGCACGCCTGACCTAAAACTGTGAGCCCTGGCGTGAGAGTCCATAACGGCGATCACAAGAACGGAAAACAGTCGGAAAGTGTGTAAGGCTTGATTAAACCCGATTCAGTCCAAATTACGGCAATTTGTTGTTACTGACCTTAAGGCACACTGATGATGAAATTCAGGTGGATCAATTAACGTTAGCGATGGACAGTCATTCCCGGCCTGCACGACGGCGAACGCTGCTTGATTGAGCAGTATGAAGTATGGAGCGAGCACATGGGACTATTAACCACACGAAGACTACTAATTCTCTGTTCTCCAGTAACTTCTGTTCCACCCGCTGGCTAATGCGTTGTAGATCAGCCTGAATGCTGGGTCTCTGAGCTAGATCCTCTTGAAGGCAGCGGGCAATCTCCAGACAGCCGACATCTTCCCTGCGCACCAACCGTCTCACAACTTGCAGACAGCGATCTCGCAACGTCAGCA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000163270

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064913 lncRNA upstream 431497 40004595 ~ 40017137 (+) True XLOC_032216
TCONS_00064912 lncRNA upstream 566407 39874524 ~ 39882227 (+) True XLOC_032213
TCONS_00062925 lncRNA upstream 731076 39700200 ~ 39717558 (+) True XLOC_032210
TCONS_00062924 lncRNA upstream 781062 39666347 ~ 39667572 (+) True XLOC_032209
TCONS_00064676 lncRNA upstream 910628 39533555 ~ 39538006 (+) False XLOC_032208
TCONS_00062941 lncRNA downstream 23871 40475711 ~ 40481661 (+) False XLOC_032222
TCONS_00062942 lncRNA downstream 25534 40477374 ~ 40481777 (+) True XLOC_032222
TCONS_00064915 lncRNA downstream 94018 40545858 ~ 40551992 (+) False XLOC_032225
TCONS_00064914 lncRNA downstream 94018 40545858 ~ 40551992 (+) False XLOC_032225
TCONS_00064917 lncRNA downstream 94025 40545865 ~ 40551992 (+) False XLOC_032225
TCONS_00062938 mRNA upstream 9019 40437987 ~ 40439615 (+) True XLOC_032219
TCONS_00062937 mRNA upstream 42700 40354424 ~ 40405934 (+) True XLOC_032218
TCONS_00062929 mRNA upstream 457080 39923052 ~ 39991554 (+) False XLOC_032215
TCONS_00062933 mRNA upstream 457636 39930825 ~ 39990998 (+) False XLOC_032215
TCONS_00062934 mRNA upstream 457636 39930825 ~ 39990998 (+) False XLOC_032215
TCONS_00062940 mRNA downstream 15722 40467562 ~ 40470521 (+) True XLOC_032221
TCONS_00062943 mRNA downstream 30490 40482330 ~ 40499799 (+) True XLOC_032223
TCONS_00062944 mRNA downstream 71530 40523370 ~ 40544207 (+) True XLOC_032224
TCONS_00062946 mRNA downstream 102711 40554551 ~ 40563509 (+) False XLOC_032226
TCONS_00062947 mRNA downstream 102770 40554610 ~ 40560065 (+) True XLOC_032226
TCONS_00062936 other upstream 399189 40043615 ~ 40049445 (+) True XLOC_032217
TCONS_00062919 other upstream 1076759 39370620 ~ 39371875 (+) True XLOC_032204
TCONS_00062894 other upstream 1590332 38845676 ~ 38858302 (+) False XLOC_032191
TCONS_00062893 other upstream 1666476 38773418 ~ 38782158 (+) True XLOC_032190
TCONS_00062884 other upstream 2071423 38377091 ~ 38377211 (+) True XLOC_032186
TCONS_00062945 other downstream 94025 40545865 ~ 40546975 (+) False XLOC_032225
TCONS_00062987 other downstream 742847 41194687 ~ 41194801 (+) True XLOC_032251
TCONS_00062995 other downstream 1002951 41454791 ~ 41454873 (+) True XLOC_032256
TCONS_00062996 other downstream 1011945 41463785 ~ 41493470 (+) False XLOC_032257
TCONS_00063008 other downstream 1401532 41853372 ~ 41869189 (+) True XLOC_032262