RNA id: TCONS_00062941


Basic Information

Item Value
RNA id TCONS_00062941
length 2588
lncRNA type lincRNA
GC content 0.44
exon number 3
gene id XLOC_032222
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40475711 ~ 40481777 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGGAAGTCAAGACTCGTCCGTGAGCGTGTGTGCGCGCGCCCGTGATTCTCGCCTGCTGTCCTCCTGACTCCTGGACTGCTGTAACGGTGCAAAATGAAGTGGGAGAATGCAGTAGTTGAGGCATAATCTCGTGTTATAATCCCGTGTGAATTACAACTTCATTGTTAACAAATGGATTTCAACCGTCATTGCCGTGTCTCAGATGCCAGATGATGTTCGACAAGAAGGACAGAGCTTCAGGAGCATCCGCCGAGCCTCAGAGGACACTTCCAGGCTTAGTCACCTGTCCCTGAAGATTGTCGGGATCATCAAAAACCCAAAACATAAGCAGCATTCAAACATctcagtgcaaaaaaaaatgtacttcaaCATGCTTCACAATAGCAAAAGTCTAAGTTCTCCAAACTCAAGAGAGCAAACACCGAAAGTGCACAGAAAAATTGTAGTGGAGCATAAGGGGTCACAAGAGAGGAGGACAAATAAAATAGTATATCCAGAAAGAAGACTACAAGTTGATGAGACAGAAGTGGAAATAATTCTGGAACAGGGAGATGAGTTAGGATGCGGGGATGAGCTAGCACATGGAGTTGATTTAGATTTAGCGGAGGGTTTAGAAAAAGACAAGCCATTGGAGTCGGAGGATGATGAAGTGTCAGTTGACCTTCATTCTGATTTATATAGTAAGAAAGAAGTAGATTATAACATAGTAGCAGAGGAGCTACAAGTAAAGGACATGGGGAAGGCAGCATGGGGGCTGactaaaaatggtaaaaataaaagttCTCGTAACGTTCAGCTGGCTTCTAATGCAGTTTATGAAAGCTTAGCACACGCAGATCGATTACTTTTTGACAAAATGTGCActggtaaaactttaattgaatcattttacCCTAGTGGTATAGTAGCAGACAGGATGTTTTCAAGTGAAGAGGACATTGATGTGATGTTCCCAGATATTTGTGATGCAGGGGAGGCATTAGCAGACAAAGATGGACTTTCCGAGTGTGACCTCTTTGAACAAACGGAGCCTCTTCAATTAACAGAGACAAAGGACAACATTAATGGAGATATTATGATGCTTACCATTGAGGAGGGATTGAACAGCTCTGATTTATCCTCAGTCGAGGAAGAGTATGATGAAATGCAGATGGAAAAAGAGCTGATGGaggaacaaataaacaaatctgtTGCAGGCAATAAAGCTGCTATTCCCTCAAACAGCGAAGAGTCTGATCATCCCTCAAATTCATCTTCATCTTCTCAGACTTGTGTTCTTTCAGGGTCCGATACAACCTTGGatgaaataacaaataacaactaCAATAGCAAAAATATGACTGAAAGCGATGAAGCAATTTCTGCCATCTTAAATCTTGTTCTTGTTCAGCAGCAACCTGAAACCCAAGACCAAAATTCTCAACAATATCAAGACGAAGAAAGCAATGGGGAAGACAAAGAAGAACAAGTGGTTGACAACCTGAGTGAATCTGAAGGAAAAGAACTCATGGTAGACAATGTGTATGAGGAGACAGAGCCAAAAATCCAAGCCAAGGACTTCCTCCAGAACAGGAAGTACTTTATGAGTCGTTCTATATCTGTGGAAACCCCCGGTAAGAGAGCTGACCTACTGAGCGGCCTTCCAGCAGGAAATGGGCGGCTTTTGCTACACCCACAGGCCTTCTATACAGACCAGTGTTTGTTTGGAGATAGCAGACCTGCACTGACAGGTTCGTTAGGATGTCTTTCACAAGGCACACGCACATCAAAAGTCACTCGAGTGGATATACCGCCCCCTTTTGAACTGGCATCCATCACGAAGCGACCAATCAGAAAGAGCTCACCGTCTATTCCCAATGAAATCTCTGCTTCATGTAAAAAGCCTGATTTTGGGTTCAAGCGATACCTTCTTCCATTGCGGTTCCTTAGGAAATCTGATCGAAAGAGTATGATGGATACTCGCTCCATCTCTTCCAGATCCTCATCCGAATCAAGTCCGCAAGGATCATGTAGACGCATGGATTTTATCCGACATAACATGGGCAGCCCAGAGTTGCAGAGGAGTCCAGATTGCACTCCGCCGGTGTCCCCTTCTTCCTTTCTCTCTCATAGGAATAGACGAAAAGAGGGACTAAATTTCTCCCTAAATAACGATTTGGCTTGTAGCTCCATATCGATTGAGCCAGGCTTCCTCTCTGAGCCCCTTCCCCTTTCCAAACCTCGATCATTTTCATCTCCGAATACAGATTCCTCTGAATACGAGAATGTTCAAAATGTTGCTTCTCACTATGAGAATGTGCAGATTCGCCTCCTGAATCCTGTCATTCAGGGTCAGCGAAATCAGAGTTCACCCAGTGACACTGATGGTTACGTGGACATGAGCAGTCTGCCAGGCTTCCAAGGCAAAAGTCAGTCATCTGAGCAAGAGACAGATAGTCTCTACACTTTCTGTTCTCCAAATGTGAGGGCAGATGGAACGGTGGGTGTGTTTGTAGGCGTGGCTTGTGCACAAGAGAAAAAGACAACGGCTCCTGACAAACTGGTGAGCTTATTGTGGTTGCTTCTCCAAAGATATCTACATACatga

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194676

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062939 lncRNA upstream 23871 40448634 ~ 40451840 (+) True XLOC_032220
TCONS_00064913 lncRNA upstream 458574 40004595 ~ 40017137 (+) True XLOC_032216
TCONS_00064912 lncRNA upstream 593484 39874524 ~ 39882227 (+) True XLOC_032213
TCONS_00062925 lncRNA upstream 758153 39700200 ~ 39717558 (+) True XLOC_032210
TCONS_00062924 lncRNA upstream 808139 39666347 ~ 39667572 (+) True XLOC_032209
TCONS_00064915 lncRNA downstream 64197 40545858 ~ 40551992 (+) False XLOC_032225
TCONS_00064914 lncRNA downstream 64197 40545858 ~ 40551992 (+) False XLOC_032225
TCONS_00064917 lncRNA downstream 64204 40545865 ~ 40551992 (+) False XLOC_032225
TCONS_00064916 lncRNA downstream 64204 40545865 ~ 40551992 (+) False XLOC_032225
TCONS_00064918 lncRNA downstream 64223 40545884 ~ 40551992 (+) False XLOC_032225
TCONS_00062940 mRNA upstream 5190 40467562 ~ 40470521 (+) True XLOC_032221
TCONS_00062938 mRNA upstream 36096 40437987 ~ 40439615 (+) True XLOC_032219
TCONS_00062937 mRNA upstream 69777 40354424 ~ 40405934 (+) True XLOC_032218
TCONS_00062931 mRNA upstream 484713 39930825 ~ 39990998 (+) False XLOC_032215
TCONS_00062943 mRNA downstream 669 40482330 ~ 40499799 (+) True XLOC_032223
TCONS_00062944 mRNA downstream 41709 40523370 ~ 40544207 (+) True XLOC_032224
TCONS_00062946 mRNA downstream 72890 40554551 ~ 40563509 (+) False XLOC_032226
TCONS_00062947 mRNA downstream 72949 40554610 ~ 40560065 (+) True XLOC_032226
TCONS_00062948 mRNA downstream 82187 40563848 ~ 40572550 (+) False XLOC_032227
TCONS_00062936 other upstream 426266 40043615 ~ 40049445 (+) True XLOC_032217
TCONS_00062919 other upstream 1103836 39370620 ~ 39371875 (+) True XLOC_032204
TCONS_00062894 other upstream 1617409 38845676 ~ 38858302 (+) False XLOC_032191
TCONS_00062893 other upstream 1693553 38773418 ~ 38782158 (+) True XLOC_032190
TCONS_00062884 other upstream 2098500 38377091 ~ 38377211 (+) True XLOC_032186
TCONS_00062945 other downstream 64204 40545865 ~ 40546975 (+) False XLOC_032225
TCONS_00062987 other downstream 713026 41194687 ~ 41194801 (+) True XLOC_032251
TCONS_00062995 other downstream 973130 41454791 ~ 41454873 (+) True XLOC_032256
TCONS_00062996 other downstream 982124 41463785 ~ 41493470 (+) False XLOC_032257
TCONS_00063008 other downstream 1371711 41853372 ~ 41869189 (+) True XLOC_032262

Expression Profile

//