RNA id: TCONS_00064917


Basic Information

Item Value
RNA id TCONS_00064917
length 2920
lncRNA type inter_gene
GC content 0.40
exon number 8
gene id XLOC_032225
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40545858 ~ 40551992 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGTGAGAGTCTGACCATCGCGATTTTAATGGACCACATGGAGAAAAAGGGAATCACATATCTCAGCAATGACTGGAAATTGATGGTCAGGAATTTCTGGGGGGAAAAAACAGATGGTGCATCGATGGACAGCCTTCCAAGATGAAGGGGTGGTGTTTGgtatagatcagtggttctcaaacctttttGCTTGAactgAAGTGGAGCAGAAAAAAGAGACTCACAGGGGGAAGCAGTGGAGATATACTGGAAGACCTGGAGCTCAGCTAACAGActggcatggagcatgtggagaaacaAGGAAACAGACCTCAGTAATGACAAGTACATGAAATAAATGAGAGTGAGTGTCACAGAAGGGACGGGATTCAGGGCAGTAATATACAcaatgtttatttacagtatgGCAGTCTTGGAGACTGGAGACGGATACCACAGATGACAAACAGGATGAAGAACAGACGAGGAACCAGGAGATATCACACTAGGAGAGACAtgaggtgcgtcccaaatcgcatacttctaCACTATTCTTTGCCATTTTGTAGTgaaaatagtgtaagtagtgcttTCACACTGACAACTCTACAAGATTGAGTGCACTTTAAattcccggatgatgcacttatttaagTGTGGActgttggacacttcacacacacaacaGCCGCAGTTTTGATCATGTAGCGGAAGGTGTGGAAATATCAGGCGCTtctgttggattactttattttggaTTAGGAAAGCAAAAATCTCCTTTGACACTGATTATGCTGCTttctgatggtgaatgcggttatactcataccagatattatttgatagtttagtCAATTCTTTTACTAATTTAACAACCGTCAAACATTatctgggaaacggtttgaatttgcGGTTAGTGAATAACTGTCAGTGTTTAATAGTGGACGATTCTACATTCATACattatgctgttgagtgtgtaagtgcataagtacatagtgtataaGTTCATAGTGTGtaatgtgccatttgggacgcagcttttgtaGGTTATAGTGAagcagaagaaggagactcacaaggGGAACGGCAGAGATATACTGGAAGACCTGGAGCTCAGGAagcaggtagaactgcttgaacagactgaacAATGGAGTTAACatctttatgttgtattttgcaGATTTTAATGGACCACATGGAAAAAAGGGAATCACACACCTTAGCAATGACTGGAAACTGATGgtcATAGAAAGagagagcaggcagaagagggagactcacaagagcatcagtggagaacAGCACATAGGTTTTTGTTGGGTCTTTGTCTTTTGCAGgttggagtggagcagaagaaggagactcacaaggGGAACGGTGGAGATATACTTGGAGACCTGAAGCTCAGGAagcagattggcatggagcatgtggaggAACAGGGAAACACAAGATTAtgtgcatggatggatgtccttcctagaggaagggggtggtggtgggcaaaGATTGTTAGAtagatgtcttgtctgtggcaGTTATTTACATTCTAGGTAATGGAACCACAACAGACAGAAGTGCAATGGTGAATATTTCTCTTTTAGAGCTCTTTTAgtcttgttttctttcttttgcagATTAGACTGGGGCATGTGGAGAAATTACAATCCCACCTCAGCGATGACTGCAAACTGATGGTCTGGTTAGATGTTTCctaaatagatggatgaatgaaatatagatgtccttccaagaggaagggggtggtggtgggcttagatagttagctagatgtcttgtctgtggcaggtgtttctttttcaaGTAATGAACACACAACaggcagaagaaggaaactcacacgaGCACCAGTGAAGATTTATCTGAAGGACACTGGAGAACATCGTGTGCATTGCTGCAGCATGTGGAGCTCTGTTAGTggtgtctttgtcttttacagactggagtgTAGGAAtaacacacctcagcaatgaccgGACACTGATGGTTAGAGGTCAGGTATTTCCTGAAATCCTGAAATATAGATgcccttccaagaggaagggggtggaggtgggcatagatttttagatgtcttctctgtggcagttatttagattgtacactgttaacccttgctgtagattatgcagtaaataaccctaaaatagccagtgttttcctttaataaataaaaacagtgtttACTGTAAAACGagtaggatttgtatgaaattgtgttgtGCAAAGAATAAATGATTAATGGTGAATTACTGTTCAACAATTACTGTCCCGTCTACTCTGATGTTTTATGTGGTTATTTGTAGAGAAGTGCGTTATCTTAAGACAGAAAACAATGGTTTAGGCACATACACGGGCTGTGTTgcccctttaagggagccaggggTTTGATGTGTTTACTTCTGAGTGTGCTCCATTCTCTGTCTAGTTTAGATGCAGAGTCTGATATTTTTTTAAGCCTTAGTAAGAATCtaaaataagtgtgtaaatgtgttcaaatatgtTTGGGGTTTGTAAAATATTATCTGTGTATTAAATCaaattgttgttatcttgaactgtgtacttgaaagctactttgttagctagttagcattTCCTCACAACTTCTTACATAACTTTGCTATAATGTACAGATGCAAACAATGTAGTGTGCCTTTCTGCCAACTAAGCAGTTTTTATACACAGTAAACATTCGGTTTCAATCTCCTCAGTGTAACTGCACAGAAATcctcacagggaatcacaaaagaTGATGCATACTGTAGACATACTCGCAAACCTTCACTGTCAGGTCTGAAGTTGTGAATTACTTGTTTTTCAGAGCTGTTTCCACATGTGAATTTATATTAggaacaatagaaaagtttgtttcCTTGAGCTTTTtaatagcctaaataaaaaaaaatgaat

Function

GO:

id name namespace
GO:0044421 obsolete extracellular region part cellular_component
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062942 lncRNA upstream 64088 40477374 ~ 40481777 (+) True XLOC_032222
TCONS_00062941 lncRNA upstream 64204 40475711 ~ 40481661 (+) False XLOC_032222
TCONS_00062939 lncRNA upstream 94025 40448634 ~ 40451840 (+) True XLOC_032220
TCONS_00064913 lncRNA upstream 528728 40004595 ~ 40017137 (+) True XLOC_032216
TCONS_00064912 lncRNA upstream 663638 39874524 ~ 39882227 (+) True XLOC_032213
TCONS_00062949 lncRNA downstream 12282 40564274 ~ 40566521 (+) False XLOC_032227
TCONS_00062951 lncRNA downstream 18787 40570779 ~ 40572104 (+) True XLOC_032227
TCONS_00064919 lncRNA downstream 100913 40652905 ~ 40656046 (+) False XLOC_032231
TCONS_00064920 lncRNA downstream 100928 40652920 ~ 40654146 (+) True XLOC_032231
TCONS_00062958 lncRNA downstream 110541 40662533 ~ 40664317 (+) True XLOC_032232
TCONS_00062944 mRNA upstream 1658 40523370 ~ 40544207 (+) True XLOC_032224
TCONS_00062943 mRNA upstream 46066 40482330 ~ 40499799 (+) True XLOC_032223
TCONS_00062940 mRNA upstream 75344 40467562 ~ 40470521 (+) True XLOC_032221
TCONS_00062938 mRNA upstream 106250 40437987 ~ 40439615 (+) True XLOC_032219
TCONS_00062937 mRNA upstream 139931 40354424 ~ 40405934 (+) True XLOC_032218
TCONS_00062946 mRNA downstream 2559 40554551 ~ 40563509 (+) False XLOC_032226
TCONS_00062947 mRNA downstream 2618 40554610 ~ 40560065 (+) True XLOC_032226
TCONS_00062948 mRNA downstream 11856 40563848 ~ 40572550 (+) False XLOC_032227
TCONS_00062950 mRNA downstream 12437 40564429 ~ 40572384 (+) False XLOC_032227
TCONS_00062952 mRNA downstream 21373 40573365 ~ 40577109 (+) True XLOC_032228
TCONS_00062936 other upstream 496420 40043615 ~ 40049445 (+) True XLOC_032217
TCONS_00062919 other upstream 1173990 39370620 ~ 39371875 (+) True XLOC_032204
TCONS_00062894 other upstream 1687563 38845676 ~ 38858302 (+) False XLOC_032191
TCONS_00062893 other upstream 1763707 38773418 ~ 38782158 (+) True XLOC_032190
TCONS_00062884 other upstream 2168654 38377091 ~ 38377211 (+) True XLOC_032186
TCONS_00062987 other downstream 642695 41194687 ~ 41194801 (+) True XLOC_032251
TCONS_00062995 other downstream 902799 41454791 ~ 41454873 (+) True XLOC_032256
TCONS_00062996 other downstream 911793 41463785 ~ 41493470 (+) False XLOC_032257
TCONS_00063008 other downstream 1301380 41853372 ~ 41869189 (+) True XLOC_032262
TCONS_00063013 other downstream 1445971 41997963 ~ 41998096 (+) True XLOC_032265

Expression Profile

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