RNA id: TCONS_00064678


Basic Information

Item Value
RNA id TCONS_00064678
length 328
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id XLOC_032225
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40545858 ~ 40551992 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgttgtattttgcaGATTTTAATGGACCACATGGAAAAAAGGGAATCACACACCTTAGCAATGACTGGAAACTGATGgtcATAGAAAGagagagcaggcagaagagggagactcacaagagcatcagtggagaacAGCACATAGGTTTTTGTTGGGTCTTTGTCTTTTGCAGgttggagtggagcagaagaaggagactcacaaggGGAACGGTGGAGATATACTTGGAGACCTGAAGCTCAGGAagcagattggcatggagcatgtggaggAACAGGGAAACACAAGATTAtgtgcatggatggatgtccttcctagaggaagggg

Function

GO:

id name namespace
GO:0044421 obsolete extracellular region part cellular_component
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062942 lncRNA upstream 68227 40477374 ~ 40481777 (+) True XLOC_032222
TCONS_00062941 lncRNA upstream 68343 40475711 ~ 40481661 (+) False XLOC_032222
TCONS_00062939 lncRNA upstream 98164 40448634 ~ 40451840 (+) True XLOC_032220
TCONS_00064913 lncRNA upstream 532867 40004595 ~ 40017137 (+) True XLOC_032216
TCONS_00064912 lncRNA upstream 667777 39874524 ~ 39882227 (+) True XLOC_032213
TCONS_00062949 lncRNA downstream 13724 40564274 ~ 40566521 (+) False XLOC_032227
TCONS_00062951 lncRNA downstream 20229 40570779 ~ 40572104 (+) True XLOC_032227
TCONS_00064919 lncRNA downstream 102355 40652905 ~ 40656046 (+) False XLOC_032231
TCONS_00064920 lncRNA downstream 102370 40652920 ~ 40654146 (+) True XLOC_032231
TCONS_00062958 lncRNA downstream 111983 40662533 ~ 40664317 (+) True XLOC_032232
TCONS_00062944 mRNA upstream 5797 40523370 ~ 40544207 (+) True XLOC_032224
TCONS_00062943 mRNA upstream 50205 40482330 ~ 40499799 (+) True XLOC_032223
TCONS_00062940 mRNA upstream 79483 40467562 ~ 40470521 (+) True XLOC_032221
TCONS_00062938 mRNA upstream 110389 40437987 ~ 40439615 (+) True XLOC_032219
TCONS_00062937 mRNA upstream 144070 40354424 ~ 40405934 (+) True XLOC_032218
TCONS_00062946 mRNA downstream 4001 40554551 ~ 40563509 (+) False XLOC_032226
TCONS_00062947 mRNA downstream 4060 40554610 ~ 40560065 (+) True XLOC_032226
TCONS_00062948 mRNA downstream 13298 40563848 ~ 40572550 (+) False XLOC_032227
TCONS_00062950 mRNA downstream 13879 40564429 ~ 40572384 (+) False XLOC_032227
TCONS_00062952 mRNA downstream 22815 40573365 ~ 40577109 (+) True XLOC_032228
TCONS_00062945 other upstream 3029 40545865 ~ 40546975 (+) False XLOC_032225
TCONS_00062936 other upstream 500559 40043615 ~ 40049445 (+) True XLOC_032217
TCONS_00062919 other upstream 1178129 39370620 ~ 39371875 (+) True XLOC_032204
TCONS_00062894 other upstream 1691702 38845676 ~ 38858302 (+) False XLOC_032191
TCONS_00062893 other upstream 1767846 38773418 ~ 38782158 (+) True XLOC_032190
TCONS_00062987 other downstream 644137 41194687 ~ 41194801 (+) True XLOC_032251
TCONS_00062995 other downstream 904241 41454791 ~ 41454873 (+) True XLOC_032256
TCONS_00062996 other downstream 913235 41463785 ~ 41493470 (+) False XLOC_032257
TCONS_00063008 other downstream 1302822 41853372 ~ 41869189 (+) True XLOC_032262
TCONS_00063013 other downstream 1447413 41997963 ~ 41998096 (+) True XLOC_032265

Expression Profile

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