RNA id: TCONS_00062949


Basic Information

Item Value
RNA id TCONS_00062949
length 394
lncRNA type retained_intron
GC content 0.44
exon number 3
gene id XLOC_032227
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40563848 ~ 40572550 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATcgctttcttttctttctcttaGTACATCTGAAGGGTTGGCTGAAACTCTTAGATCTGTTGCAAGCTCACAATTGTGGAGCTTTGTAGGGTATTCTCTGCCCATTGCATCCCTCTTCTCTGCGGAGAGCTACAGTCATCTGGAATTTTCTGACATGAACAGTGATGACAGTGAGGTGAAAAGTATAAGTGAAATGGACGTCAGTGTACAACAAGAGAAAACATATGTTGCCAAGTTTGAATCCGAGTACATCAATAGTTCTGTCCCTTTATATCAGGAGTATTGGATGCGCTCCTTCAAGAAGGACTTAAACCGAGCACAGCTTGCAGGACTTTCAGAATTGGTTGCATCTGTGTGTCTCCCTGGTCTGAAAACTCCCCCATCTTTAAGCCC

Function

GO:

id name namespace
GO:0090630 activation of GTPase activity biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5406 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in activation of GTPase activity. Predicted to be active in cytoplasm and nucleus.

Ensembl:

ensembl_id ENSDART00000154412

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064915 lncRNA upstream 12282 40545858 ~ 40551992 (+) False XLOC_032225
TCONS_00064914 lncRNA upstream 12282 40545858 ~ 40551992 (+) False XLOC_032225
TCONS_00064917 lncRNA upstream 12282 40545865 ~ 40551992 (+) False XLOC_032225
TCONS_00064916 lncRNA upstream 12282 40545865 ~ 40551992 (+) False XLOC_032225
TCONS_00064918 lncRNA upstream 12282 40545884 ~ 40551992 (+) False XLOC_032225
TCONS_00062951 lncRNA downstream 4258 40570779 ~ 40572104 (+) True XLOC_032227
TCONS_00064919 lncRNA downstream 86384 40652905 ~ 40656046 (+) False XLOC_032231
TCONS_00064920 lncRNA downstream 86399 40652920 ~ 40654146 (+) True XLOC_032231
TCONS_00062958 lncRNA downstream 96012 40662533 ~ 40664317 (+) True XLOC_032232
TCONS_00062966 lncRNA downstream 271129 40837650 ~ 40840901 (+) True XLOC_032238
TCONS_00062946 mRNA upstream 765 40554551 ~ 40563509 (+) False XLOC_032226
TCONS_00062947 mRNA upstream 4209 40554610 ~ 40560065 (+) True XLOC_032226
TCONS_00062944 mRNA upstream 20067 40523370 ~ 40544207 (+) True XLOC_032224
TCONS_00062943 mRNA upstream 64475 40482330 ~ 40499799 (+) True XLOC_032223
TCONS_00062940 mRNA upstream 93753 40467562 ~ 40470521 (+) True XLOC_032221
TCONS_00062952 mRNA downstream 6844 40573365 ~ 40577109 (+) True XLOC_032228
TCONS_00062953 mRNA downstream 21030 40587551 ~ 40606273 (+) False XLOC_032229
TCONS_00062954 mRNA downstream 24628 40591149 ~ 40604033 (+) False XLOC_032229
TCONS_00062955 mRNA downstream 24693 40591214 ~ 40604033 (+) True XLOC_032229
TCONS_00062956 mRNA downstream 62545 40629066 ~ 40646203 (+) True XLOC_032230
TCONS_00062945 other upstream 17299 40545865 ~ 40546975 (+) False XLOC_032225
TCONS_00062936 other upstream 514829 40043615 ~ 40049445 (+) True XLOC_032217
TCONS_00062919 other upstream 1192399 39370620 ~ 39371875 (+) True XLOC_032204
TCONS_00062894 other upstream 1705972 38845676 ~ 38858302 (+) False XLOC_032191
TCONS_00062893 other upstream 1782116 38773418 ~ 38782158 (+) True XLOC_032190
TCONS_00062987 other downstream 628166 41194687 ~ 41194801 (+) True XLOC_032251
TCONS_00062995 other downstream 888270 41454791 ~ 41454873 (+) True XLOC_032256
TCONS_00062996 other downstream 897264 41463785 ~ 41493470 (+) False XLOC_032257
TCONS_00063008 other downstream 1286851 41853372 ~ 41869189 (+) True XLOC_032262
TCONS_00063013 other downstream 1431442 41997963 ~ 41998096 (+) True XLOC_032265

Expression Profile

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