RNA id: TCONS_00062954


Basic Information

Item Value
RNA id TCONS_00062954
length 2188
RNA type mRNA
GC content 0.56
exon number 6
gene id XLOC_032229
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40587551 ~ 40606273 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAAAGGAGGACAGTATACTCAGAGGATTGTTCATCAACTCCTGTTCCCTTTCTCTCTTTTATAGGAGAAATGAAACGTTTGTGCACTGGGACTGGATGCTTTCACCAGCACAACCCACTTCCGCCATGACACCCAGCAGAGGATTCTGGGATTGACGCAAGCATCACTCCCACTGATGGCCTGGACCAGGTTTCAGCTGTCCTGCTGAAGCTATGGGGAGCTGCTGGAGCTGTCTATACAGAGACGCCATCCAAGACAACCATCTTAACAAATTCAAGGTGAATTTAATCTGTTCACTCTTagtatttgtaaaaacaaacctTTCTGTGGCATAAATGTAGGATCCTTGTTACCGGTTTTGTTTGACAGGTGACTAATGTGGACGATGAGGGAAATGAGTTGGGCTCAGGAACAATGGAGCTCACGCAGACTGAGCTCATTCTGCACACACGCAAACGGGACGCCATCCGGTGGCCGTACCTGTGCCTGCGTCGATACGGCTATGATTCCAACCTCTTCTCTTTCGAGAGCGGCCGCCGTTGTCAGACAGGACAAGGGATCTTTGCATTCAAGTGCTCTCGTGCAGAAGAGATCTTCAACCTGCTGCAGGAGTTGATGCAGTGTAACAGCATCAACGTGGTGGAAGAGCCCATGATCATGACCCGACCCGGCCACGCACCAGAGATGGACATGCCTCGAACTCCACAGACACCCAATACCCCTGCCTTCCCGATGCAGGGTTTTCCTAATGGATACCCAGGATACCCAATCAGTGCAGACTCATCGCAGCCCTCTCTCACCAACGACCACAGACACAGCCTCATGGGACTCGATGACCAAACCCATACATACGTGAATACGGTCGGGATGGAAACTGACCTGTCAAGCCGCCACTGTGTCCACTCCCTGCCCGAAGTGCGGCCTGCCACCTACCCAGAAGCcacaaccaccaccaccaccatacGTGGGGGCCCGATCCCAGGCCAGCCCGGCATGCACTGCTGCCCGCTGGACGACCCTCACAAAGACCCTCAGGTCTTCCTCCAGCCCGGAGCCCAGGAGGTGAAGTTCATGCTGGGCCCGACCCCAGCACAGCGCCACCTAATGGAAAGAGACAGAGAGCGCCACGTCCCTCACTCGCTCCGAGCGCCAGACGGCAGCTCTGAAACCGAAGGGGAGGAGACTCCTCCTGTACACATGTGCAACACACACTCCTACCACCATTGCCATCACCTGATGCACAGACACCCCAGCATGGAGCCGTGTCCGGAGAGCCAGCTGACCTATGAGAACATCAACGGACTCAGAGGGGCACGGAGGCAAAGGCTCAGTCCTAGCACCGTGTCTCAGTCTCAGTCTTTGGGctccagtagcagcagcagcaccaCGGGCgactcacgcacacacacgcatccACACTCActcccactcacacacacacacacttcctcacTGCCTCCGCAGGGATACGGCTGTGACCGAGGAATGGTGGCCGCCGGTCATCGGCGCACAGCATTGCTCAACTACGAAAACCTTCCGTCGCTCCCTCCAGTTTGGGAATACCGTGCACTCCAGCGGGAGGAAGAAGAGGATCAGGATGAGGACGAGGATGAGGACGAAtatgaggaggaagaggaagaagagtATGATGAGTATGAGTATTCAGAAGGGCCCGCTACCCCTAACGGATATCATCAGGAGAGCGGCGGTGGCGGGATTCATCGAGACGCTCTGCAGAACTACGTCAACACTGAACAGCTACCACCTCCTACACGTCTCCGTCATGCTTGCCCTCCTCACCCTCACCCACCTGAGAGGGCCAACCGAGTTTTCAACTTTGACTTCAGACGTCAGCGAGCAGGACGTGGCAGCAGCATCTGCGAGCAGCACAGTCGTCACCCGCCTCCACCTCCCTCTCGACAGCTCAACTACATCCAGGTGGACCTGGAGGGGGAACCCTCCGGATGTTCGGGACACAGCGGCGGCGCTCCGGTACCACAGAGACCTCCACCCCTCAAACGGGGCATGGCAGCCGCCGCAGCGCCTCCATCATCCCGCAGAGGAGAGTGTTACGCAGTGATTGACCTAAAGAAAACTGCAGCCATGTCCAACCTCCAGAAGGCTCTCCCTCGGGATGACGGCACCTCGCGGAAAACACGCCACAACAGCACCGACTTGCCTCTGTGA

Function

GO: NA

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-131121-119 Predicted to enable fibroblast growth factor receptor binding activity and transmembrane receptor protein tyrosine kinase adaptor activity. Predicted to be involved in fibroblast growth factor receptor signaling pathway. Predicted to be located in membrane. Predicted to be active in cytoplasm. Is expressed in female organism. Orthologous to human FRS3 (fibroblast growth factor receptor substrate 3).

Ensembl:

ensembl_id ENSDART00000189060

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062951 lncRNA upstream 19045 40570779 ~ 40572104 (+) True XLOC_032227
TCONS_00062949 lncRNA upstream 24628 40564274 ~ 40566521 (+) False XLOC_032227
TCONS_00064677 lncRNA upstream 40599 40548976 ~ 40550550 (+) False XLOC_032225
TCONS_00064919 lncRNA downstream 48872 40652905 ~ 40656046 (+) False XLOC_032231
TCONS_00064920 lncRNA downstream 48887 40652920 ~ 40654146 (+) True XLOC_032231
TCONS_00062958 lncRNA downstream 58500 40662533 ~ 40664317 (+) True XLOC_032232
TCONS_00062966 lncRNA downstream 233617 40837650 ~ 40840901 (+) True XLOC_032238
TCONS_00064921 lncRNA downstream 380564 40984597 ~ 40986135 (+) True XLOC_032242
TCONS_00062952 mRNA upstream 14040 40573365 ~ 40577109 (+) True XLOC_032228
TCONS_00062948 mRNA upstream 18599 40563848 ~ 40572550 (+) False XLOC_032227
TCONS_00062950 mRNA upstream 18765 40564429 ~ 40572384 (+) False XLOC_032227
TCONS_00062946 mRNA upstream 27640 40554551 ~ 40563509 (+) False XLOC_032226
TCONS_00062956 mRNA downstream 25033 40629066 ~ 40646203 (+) True XLOC_032230
TCONS_00062957 mRNA downstream 57670 40661703 ~ 40669406 (+) False XLOC_032232
TCONS_00062959 mRNA downstream 67303 40671336 ~ 40689042 (+) False XLOC_032233
TCONS_00062960 mRNA downstream 67394 40671427 ~ 40682556 (+) True XLOC_032233
TCONS_00062961 mRNA downstream 110778 40714811 ~ 40717048 (+) True XLOC_032234
TCONS_00062945 other upstream 44174 40545865 ~ 40546975 (+) False XLOC_032225
TCONS_00062936 other upstream 541704 40043615 ~ 40049445 (+) True XLOC_032217
TCONS_00062919 other upstream 1219274 39370620 ~ 39371875 (+) True XLOC_032204
TCONS_00062894 other upstream 1732847 38845676 ~ 38858302 (+) False XLOC_032191
TCONS_00062893 other upstream 1808991 38773418 ~ 38782158 (+) True XLOC_032190
TCONS_00062987 other downstream 590654 41194687 ~ 41194801 (+) True XLOC_032251
TCONS_00062995 other downstream 850758 41454791 ~ 41454873 (+) True XLOC_032256
TCONS_00062996 other downstream 859752 41463785 ~ 41493470 (+) False XLOC_032257
TCONS_00063008 other downstream 1249339 41853372 ~ 41869189 (+) True XLOC_032262
TCONS_00063013 other downstream 1393930 41997963 ~ 41998096 (+) True XLOC_032265

Expression Profile

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