RNA id: TCONS_00064919


Basic Information

Item Value
RNA id TCONS_00064919
length 2537
lncRNA type intronic
GC content 0.34
exon number 2
gene id XLOC_032231
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40652905 ~ 40656046 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttttgaatataATTGTGCTTTATTGCATTTGTTGATTACAAAACTGGATACATGTACAGTCCATGTCCTGCATTTATGGAAAGTATAAGAATCTTATTAAGCAATATGACATGCTTATTCTTTAATATATACATCACAAGACTAAATCAAAACTCTGAATGCAAGTTATTAATCAAAACTGTTCCATTGTGACAGTGCAGGTACAGAGTGAAAGGGGAAAATGGCGATCAAATTCCCAGTGATTGATGGCATTACCAGGCAGTATTAGACACAGTATCAACATCTAAACTTGCCTGGTAAGACACAAATCAGAGGATTTTACTGCAGTATAGAGGCAGAGGGAAAATCAGATGTCATGTGACTGTAGAAGAGATGAAAGCAGACATGAGGAAATGACGTCATTAAAGTGGATATTTGTTATTTCAGGAAATAGATCTGGGAAGAAACTGTTAGTAAAGGATAAGGTGCAAGCAAAGACTTATGGTAGAGTTTATGAATATTTCACAAGCAGCAAATGTCTTTTTGAGATGCATTTCGTCTTTTTGGTCTTggcaaaaacaagactaaatttgggctgtcagcgaaaatctaatagacatccaagaaTAGGCCAAAAACTAggctagtcgtcaaatagacagattaggcagactttatatgtgtagtcattcatttctgttcacTTGataactagtctagttttggcctatttttagacgtctattagacatctgttAGATTTCGACTAACAGaccaaatttagctttgttttagccaagacgactatgtttagacgtctattagaaatctattagatatctattagacgtctattagatttagactaacagcccaaatttagctttgttttagccaagacgactatgttaaGATGACTATTAGAAATCTATTAGATATCTATTAGATTTAGActaacagcccaagtttagctttgttttagccaagacaacaaTGTTTAGACGTCTTTTAGACATCTAttggacatctattagattttgacaaacagcccaaatttagccttgttttaggcaAGACGACCATGTTTAGACGTCTATAAGGCATCTATCAGACAtcttctgaaaacaaaaaaaaggttgCTGGGTTTGTTTGTGTCATGTAGGTTTGTatgtgattaaatgatgacagaacgaCCAACACATCCCTAAATTATTTAACGAGAAGAAAATAACATTATTTCCATCttccaaaaacaaacatttttattggtggcacatatttattcataaaaaacaaaaatgttcaaaTGAGCTGACAGTCGGTTTCTTCTTTATCATTTAAATGGCTAGTTTACACTAAAATGAGACCGTAAACATGTATtggaaaaaagcaaaaaaactcAAATGGGGTTGAGATCAAGTTGAAAGTGAGCAAATAATGACTTTTCATTTTGAAGTAAATCAAATCTcttttaaaatgtgaattttcTTTGCACATTCCATCAGACAACACATAGACCTGTAATATAAGTGTCAAATCACTAACATGAGAGCCGCATGTCTACcagtcattttaatattttaccgACTGGCATTACTTCCTCCTCCAGCACAGCGAACAGGAAAGACGAACTGTGTAGGCGCAGTTCAATTAGTGTTTGTCACACAGATCTCAGGTGTCATCTACACAATAAGTGACAAGAAAAGAAGGATGAACTGATCATTGACTGGCACGTCACACATTAGAGGGTGTGTGAGTGTGGAGGAATTGCTTTTGTGGCAATTATGAAGACCATTGGACACAACAGGGTGGAGTTTAGAACTGAAGGCTAAGGGGGAGAatctatatttatacacacacaaacacacatacacacacaaaaattagGGATTCAATATAAAGTTTTTGCAGTGGGATCACAGAAGAGCCATTTTGTGCTCCTTAAAATTATTTCTCAATCAGGTTTTTTAAAATAGGTAACTAAATTAAATGCAGGGGATCCACACATTTCCttcacgttgtcccaacacaaatcgattaagttaacttaattgttttgtttaagtggattggacataaaataattaagtcgTCACTCATAAAaattaaagaattgtgttgtttcaacttatttttacctaagtagtttgaacaatgaTTTTTTGAGTATAAGGAAagtaatgtgtatgtatgtgttactGTTTTTTTAGAGTTTTATTAGGGTTTAAAATTGTAATCCTGTATGTCAATGTGTCATATGTTTTCTCTTGTTATAGAGAACATTTCAATATCCTAAAGAACTTTTTCCTCAGTTTATGGATGTTTAGATGATAAAGGGTCTTCATGGAACCACCAAAGAGTATTTTCTTCGTTATTTTACTTGACTACATTATTTCAATCAAGCAGTCTTAAtgcagttttaaaacaatttgtttAAAAGACCAAACTATGCCACATTTGCTAGTTCTTTGAaagaattttatttgttttctcatATCATAATGGTTTATTGAGTCACCAGAGTGCATCGTTACCAGACAGTGTTAGAACATCAGTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062951 lncRNA upstream 80801 40570779 ~ 40572104 (+) True XLOC_032227
TCONS_00062949 lncRNA upstream 86384 40564274 ~ 40566521 (+) False XLOC_032227
TCONS_00064918 lncRNA upstream 100913 40545884 ~ 40551992 (+) False XLOC_032225
TCONS_00062958 lncRNA downstream 6487 40662533 ~ 40664317 (+) True XLOC_032232
TCONS_00062966 lncRNA downstream 181604 40837650 ~ 40840901 (+) True XLOC_032238
TCONS_00064921 lncRNA downstream 328551 40984597 ~ 40986135 (+) True XLOC_032242
TCONS_00064922 lncRNA downstream 424464 41080510 ~ 41082985 (+) True XLOC_032245
TCONS_00062980 lncRNA downstream 440127 41096173 ~ 41102304 (+) False XLOC_032246
TCONS_00062956 mRNA upstream 6702 40629066 ~ 40646203 (+) True XLOC_032230
TCONS_00062953 mRNA upstream 46632 40587551 ~ 40606273 (+) False XLOC_032229
TCONS_00062954 mRNA upstream 48872 40591149 ~ 40604033 (+) False XLOC_032229
TCONS_00062955 mRNA upstream 48872 40591214 ~ 40604033 (+) True XLOC_032229
TCONS_00062952 mRNA upstream 75796 40573365 ~ 40577109 (+) True XLOC_032228
TCONS_00062957 mRNA downstream 5657 40661703 ~ 40669406 (+) False XLOC_032232
TCONS_00062959 mRNA downstream 15290 40671336 ~ 40689042 (+) False XLOC_032233
TCONS_00062960 mRNA downstream 15381 40671427 ~ 40682556 (+) True XLOC_032233
TCONS_00062961 mRNA downstream 58765 40714811 ~ 40717048 (+) True XLOC_032234
TCONS_00062962 mRNA downstream 67508 40723554 ~ 40732692 (+) True XLOC_032235
TCONS_00062945 other upstream 105930 40545865 ~ 40546975 (+) False XLOC_032225
TCONS_00062936 other upstream 603460 40043615 ~ 40049445 (+) True XLOC_032217
TCONS_00062919 other upstream 1281030 39370620 ~ 39371875 (+) True XLOC_032204
TCONS_00062894 other upstream 1794603 38845676 ~ 38858302 (+) False XLOC_032191
TCONS_00062893 other upstream 1870747 38773418 ~ 38782158 (+) True XLOC_032190
TCONS_00062987 other downstream 538641 41194687 ~ 41194801 (+) True XLOC_032251
TCONS_00062995 other downstream 798745 41454791 ~ 41454873 (+) True XLOC_032256
TCONS_00062996 other downstream 807739 41463785 ~ 41493470 (+) False XLOC_032257
TCONS_00063008 other downstream 1197326 41853372 ~ 41869189 (+) True XLOC_032262
TCONS_00063013 other downstream 1341917 41997963 ~ 41998096 (+) True XLOC_032265

Expression Profile

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