RNA id: TCONS_00062958


Basic Information

Item Value
RNA id TCONS_00062958
length 534
lncRNA type retained_intron
GC content 0.48
exon number 5
gene id XLOC_032232
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40661703 ~ 40669406 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTGTGATGTGTAGTCATTCACATTCACCAGAAACTGTTCCCTTTGTTTTTATAATCTATCTTTTTATCaattagatttttaaagaaagatgTCTATTCTGAAGATACACGCTCGTGAGATTTTTGATTCTAGGGGCAACCCCACTGTGGAGGTGGACCTCTACACAGAAAGAGGTCTGTTTCGAGCTGCTGTCCCCAGTGGAGCTTCTACTGGGATCTATGAAGCGCTGGAGCTCAGAGACAATGATAAGTCCCGCTACCTGGGCAAAGGTGTATCAAAGGCTGTTGAGAATGTGAACCAACATATTGCACCTGCTCTCATTGGCCAGGGAATTCCTGTTGTTGAGCAAGAAAAGATTGACCAGTTCATGCTGGAACTGGACGGAACTGAGAATAAGTCCCGATTTGGTGCCAATGCCATCCTGGGTGTGTCCCTGGCGGCGTGTAAGGCAGGAGCTGCGGAGAAAGGTGTTCCTCTGTACCGTCACATTGCTGACCTTGCTGGAAACCCAGAGGTCATTCTGCCTGTGCCGG

Function

GO:

id name namespace
GO:0032889 regulation of vacuole fusion, non-autophagic biological_process
GO:0006096 glycolytic process biological_process
GO:0000015 phosphopyruvate hydratase complex cellular_component
GO:0004634 phosphopyruvate hydratase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1651 Predicted to enable phosphopyruvate hydratase activity. Predicted to be involved in glycolytic process and regulation of vacuole fusion, non-autophagic. Predicted to be part of phosphopyruvate hydratase complex. Human ortholog(s) of this gene implicated in Alzheimer's disease. Orthologous to human ENO1 (enolase 1).

Ensembl:

ensembl_id ENSDART00000151894

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064919 lncRNA upstream 6487 40652905 ~ 40656046 (+) False XLOC_032231
TCONS_00064920 lncRNA upstream 8387 40652920 ~ 40654146 (+) True XLOC_032231
TCONS_00062951 lncRNA upstream 90429 40570779 ~ 40572104 (+) True XLOC_032227
TCONS_00062949 lncRNA upstream 96012 40564274 ~ 40566521 (+) False XLOC_032227
TCONS_00064677 lncRNA upstream 111983 40548976 ~ 40550550 (+) False XLOC_032225
TCONS_00062966 lncRNA downstream 173333 40837650 ~ 40840901 (+) True XLOC_032238
TCONS_00064921 lncRNA downstream 320280 40984597 ~ 40986135 (+) True XLOC_032242
TCONS_00064922 lncRNA downstream 416193 41080510 ~ 41082985 (+) True XLOC_032245
TCONS_00062980 lncRNA downstream 431856 41096173 ~ 41102304 (+) False XLOC_032246
TCONS_00063001 lncRNA downstream 840798 41505115 ~ 41505986 (+) True XLOC_032258
TCONS_00062956 mRNA upstream 16330 40629066 ~ 40646203 (+) True XLOC_032230
TCONS_00062953 mRNA upstream 56260 40587551 ~ 40606273 (+) False XLOC_032229
TCONS_00062954 mRNA upstream 58500 40591149 ~ 40604033 (+) False XLOC_032229
TCONS_00062955 mRNA upstream 58500 40591214 ~ 40604033 (+) True XLOC_032229
TCONS_00062952 mRNA upstream 85424 40573365 ~ 40577109 (+) True XLOC_032228
TCONS_00062959 mRNA downstream 7019 40671336 ~ 40689042 (+) False XLOC_032233
TCONS_00062960 mRNA downstream 7110 40671427 ~ 40682556 (+) True XLOC_032233
TCONS_00062961 mRNA downstream 50494 40714811 ~ 40717048 (+) True XLOC_032234
TCONS_00062962 mRNA downstream 59237 40723554 ~ 40732692 (+) True XLOC_032235
TCONS_00062963 mRNA downstream 111483 40775800 ~ 40783641 (+) True XLOC_032236
TCONS_00062945 other upstream 115558 40545865 ~ 40546975 (+) False XLOC_032225
TCONS_00062936 other upstream 613088 40043615 ~ 40049445 (+) True XLOC_032217
TCONS_00062919 other upstream 1290658 39370620 ~ 39371875 (+) True XLOC_032204
TCONS_00062894 other upstream 1804231 38845676 ~ 38858302 (+) False XLOC_032191
TCONS_00062893 other upstream 1880375 38773418 ~ 38782158 (+) True XLOC_032190
TCONS_00062987 other downstream 530370 41194687 ~ 41194801 (+) True XLOC_032251
TCONS_00062995 other downstream 790474 41454791 ~ 41454873 (+) True XLOC_032256
TCONS_00062996 other downstream 799468 41463785 ~ 41493470 (+) False XLOC_032257
TCONS_00063008 other downstream 1189055 41853372 ~ 41869189 (+) True XLOC_032262
TCONS_00063013 other downstream 1333646 41997963 ~ 41998096 (+) True XLOC_032265

Expression Profile

//