RNA id: TCONS_00062959


Basic Information

Item Value
RNA id TCONS_00062959
length 4344
RNA type mRNA
GC content 0.51
exon number 17
gene id XLOC_032233
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40671336 ~ 40689042 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTCCATTTTGAGTAGTATGAAATAGAGGAAAGCATAGTTTGGAGCCGCCGCCGCAAACAAACTGTAAACACTAGCGAAACAGCCTCTGCCATGGACGACTTGTTCAGTCCGCGAAGGCAGCTGAATAGCACACAAGGAGAGATTCGAGTTGGACCAAGTCATCAGGCCAAGCTCCCAGAATTACAGCCGCCTCCTGCTCACGGTACAGAGTCGGTCACAGAAAATGAGGATCTGGTTTGGGCACCTGGGGTCAATGACTGTGACCTTCTCATGTATCTGCGGGCTGCCAGGAGCATGGCAGCTTTTGCAGGGATGTGTGATGGAGGTTCAACAGAAGATGGTTGTCTTGCAGCTTCACGGGATGATAccactttaaatgctttaaatacgCTTCATGAAAGCCAATATGATGCAGCCAAAGCACTTCAGTGCCTGGTGAAGAAACCTGTTCCAAAGCTTATTGAGAAATCCTGGTCTGAAGATGAAGTGAAACGGTTTATCAAAGGACTCAGACAGTACGGCAAAAACTTCTTCAAGATTCGTAAGGATCTACTGCCTAGTAAGAAAACGGGTGAGCTGATCACATTTTACTACTACTGGAAGAAAACTCCAGAAGCTGTGGCGGCGCGACCTCACCGTCAGCAAAGAAGACAGCCAGTGTCTCGCAAAGTGAAAACTCGCAATGCAACAGCTGCAGCCAATGCAACATCTCGCACTTCTTCTATGGAGCTCAGTTCGGCCAGTGAAGATGATCTGGACAGTGAGGATAGTGAGCAGGGTGGCAAACGTCAAGCTTGCAGTCACTGTCTATCCACTAACTCCAAAGACTGGCATCATGGTGGAAGAGATAATGTCTTGCTGTGCTCTAGCTGCCACACTCACTTCAGCAAACATCGGCGTCTGCCACCCGTTCCCAAACCAGCAGACCCACCGTATCTCTTCAAACCCGTCaaagaagaggaagaggaaagCAGGCATGGCATGAAGACCCGCCGCAGCCGCGTGCCCCCACATATGTCATCTCTTCGAAGCGGACGCAACAGGCCAACCGGGAGTCCCGAGAGGGGCCTCTCTCCGCCATCTGAGGATGTGCGGCCTAATGGTCAGTCCTCTAGAGCCAGTTCCACTACAATGACAACCAGGGCGTCCAGCTCAGATATGAAGAATGGAGTTGCTGGCAAGACCAACAAGAAGATGAAAGTAGAGGCGTCTGTTGTAAAGGGTGTGAAAAGACAGAGAGAGTCAGCTGCTCCAGATGCTGACGAACCGGAGAGGAAAAACATGAAACGACCAAAGAATCAGGAGGGTCCTGATTCTCCATCAGAATGTGAGGGTGAAGGCGAAAGCTCTGACAGCCGCAGTGCCAACGAGGATGGCAGCAGTGACACTAAAGACATTGATCAGGACAACCGCAGCTCCTCCCCGAGCCTAGCTAGTCCTCTGCAAGCCAATGAAAGTGATTCAGACTCCCCAGCACCACCGCCTGCATCAGGCCCAATTACACAAGCCCAGCCCCAGCAGCCTGCTGCAGCCTCCACAACACACACCCCATCTGAATCTCCTCCATCTCCTCAGCCCACTCTGCCTACATTTTCATCAGCACCTTCGCCCGGAGCGGCTACAACTACTGTTACATCGAAGGCACCATCTGCGGAGACGACCCTGGATGTTCCCTCTCCATCCCCTTTCAGAAGTGGCCCCAAGGCACCCGAGGCTCCCACCTCTTACTCAAACTCCTCATCTCAACAGGTGCAATGTCCAGGACAGGGGCAGTCATTGCCTGTGCCAGCCCATTATCAGCACAATTCAGGTCAGCTACAAAATCCTTCATCTGGAGCCAATCAGCCACAAGGATTCACTTCCAGACCACTGCACCTTCAAAGAGAGAGTCCTTTTCCTCCTCTTCCTGCTACAGCAACATCCCAAATCAAGCCCCCTCCGACCACTCCAATTCCACCTTCTCACAAGCAGCCACCTCACCTTTCTGCACCTCCACCCCATTTCCTACAGATCCACCCTAATTTACCTCCACCTCCAGCTCTGAAGCCACTCGCTTCCTTGCCCTCACAGCATTTGCCTTCCTCCCAGCCTCCTCCACTGCATGTAATTCCACAAAATAACCCCGCTCCGCCTTCAGTCCTAACTCAGACACAGAGCCAGCAAGTTAAAAGCCACAGCAGTGCTGCACCTCAGGTCGCAGCTAGTTCTCACCCACCGCTGCCCCCGAATCGCCCTTCTCCTGAGTCTACTGCTTCATACCCTCTTTACACTTCTCCCATCCCTGTCCCAGCCCATCAGCCCTCCACATCCTCCTCAGCAAGCACTCCTGTTGGTCAGGCTATAATCAAAGAGGAGCCAGTTGATGAGGAAGAGGAATGTGATAGTCCGCCTCCTCCTCGCAGGAGTCCCTCTCCAGCACCAACAGTTGTGGACATTCCCAGCCATGCAAGTCAGTCAGCAAGATTCATCAAACACCTCAACCGAGGCTACAACTCCTGCTCTCGCACAGACCTGTACTTCACCCCCTTGACCTCCTCAAAACTGGCTAAAAAGCGAGAGGAAGCTGCCGAACGGTCCAGAAGAGAAGCAGAGCTGAGTGCTCGACAAggaagggagagagaaagagaaagagagcgagagcgggagagagaaagagagcgggagcgagagcgagagagagactcTGATAAAGCCTCTCGTGCTTCAAGCTCATCCCACGATGGCCGCATAAGTGAGCACCTTCTTGCGGCCCACGTGCAGCCAGGTCGTCCATCATTTGAACCTCCCCCACCCACCACCGTTGCTGCTGTTCCTCCTTATCTTGGCCCTGACACTCCAGCTCTGCGCACACTCAGCGAGTACGCCCGGCCACATGTCATGTCACCCACCAACCGCAACCATCCCTTCTTCATGCCATTGGGCCCAGGTGAGCACCTGCTAGCTTATCACATGCCTGGGCTCTACGCAGCAGACCCAGCGCTCAGAGAGCGGGAACTTCGTGAGCTTCGAGAGCGAGAAATCAGGGAAAGAATGAAGCCCGGATTTGAGGTGAAGCCGCCAGAGCTGGAGAACCCACTTCATCCATCAGCAAATCCTATGGAGCACTTTGCCCGCCATGGTGCCCTGCCACTGGCTCATGTGGCTGGACCTCACCATTTTGCCCAGTTCCACCCAGCCATGGAGCGCAATGTAGCAGCTCCACCTCGACCAGAAATCAGCTATGCTGAGCGTTTAACAGCTGAAAGGCTCCATGCTGAAAGGATGGCCTCTGTTGCTGCTGGTGACCCTGTTGCACGGCTTCAGATGCTCAATGTCACACCGCACCACCACcaacactcacacatacactcccATCTTCATCTGCACCAACAGGACCCTCTCAACCAAGGCCAAGGGCCTCATCCCCTAGTGGACCCATTGGCTGCTGGCCCTCCACTGGCACGTTTCCCTTACCCTCCCGGTGCCATCACTAACCCCCTACTCAGTGAGTTACCACACGAGCATGAAATGCTCCGCCACCCTCTGTTTGGAGCACCATTCCCCAGAGAGTTACCAGGCCCACTGGCTCCGATGTCAGCTGCGCATCAGTTGCAGGCGATGCAGGCACAGTCAGCAGAGCTGCAGAGGCTGGCACTGGAGCAGCAGTGGCTACACGGACACGCACACTTACACAGCGCTCCTCTCCCCAGCCAAGAGGACTATTACAGCCGTCTGAAGAAAGAAGGAGACAAGCAGTCCTGAAATGAACAAATTCTCCACTGTGGATTATAGAGTGAATTCTGTGTTCAGGGTATCAAGCCTTTTGTTTCCCGAAAAACCCAGCGTGGGTTTATCCCCATTTTGGCACTTATGAACGTTTGACCGACTCCTTTGTGCTGTACGAAATAAGTAGCCTTTTGGAGCTCACTGAATTCGCTTTCCTTGCATGAACACTATTTAGAAACGGTTTCTGTCAGAAATGATATTCCCATGTAAtgtggttattgtgctgaaagcACAGTACAGTAGATTTACTAAGTATTTGAGAAGTGCTGTCCATTATCCAGAGTTTATCACAGTTTAGTTTCAAAGTTTATTGAAACACTCGTTTTAAGATTGTAAATActatatgtttaaaataatatattaactgTTAAAAGTTGCAATGATAGATTTGGATACAAAAATTTCAGATGACTTGTGTGCAAAAAGTGCATGCTTTACATACGCTATCCTTCCCTTTCTCTGACAGCCTCTTCATCTATGCCTCAGAGTGCTCATCAGTATAAAATCCACTTTATTTTTGTCTGTAATTTCAATTTTTTAACCGTTTGAAACGTAGACCAAATGCAGCTAGAGTGTTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003714 transcription corepressor activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0001085 RNA polymerase II transcription factor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070212-3 Predicted to enable transcription corepressor activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human RERE (arginine-glutamic acid dipeptide repeats).

Ensembl:

ensembl_id ENSDART00000111639

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062958 lncRNA upstream 7019 40662533 ~ 40664317 (+) True XLOC_032232
TCONS_00064919 lncRNA upstream 15290 40652905 ~ 40656046 (+) False XLOC_032231
TCONS_00064920 lncRNA upstream 17190 40652920 ~ 40654146 (+) True XLOC_032231
TCONS_00062951 lncRNA upstream 99232 40570779 ~ 40572104 (+) True XLOC_032227
TCONS_00062949 lncRNA upstream 104815 40564274 ~ 40566521 (+) False XLOC_032227
TCONS_00062966 lncRNA downstream 148608 40837650 ~ 40840901 (+) True XLOC_032238
TCONS_00064921 lncRNA downstream 295555 40984597 ~ 40986135 (+) True XLOC_032242
TCONS_00064922 lncRNA downstream 391468 41080510 ~ 41082985 (+) True XLOC_032245
TCONS_00062980 lncRNA downstream 407131 41096173 ~ 41102304 (+) False XLOC_032246
TCONS_00063001 lncRNA downstream 816073 41505115 ~ 41505986 (+) True XLOC_032258
TCONS_00062957 mRNA upstream 1930 40661703 ~ 40669406 (+) False XLOC_032232
TCONS_00062956 mRNA upstream 25133 40629066 ~ 40646203 (+) True XLOC_032230
TCONS_00062953 mRNA upstream 65063 40587551 ~ 40606273 (+) False XLOC_032229
TCONS_00062954 mRNA upstream 67303 40591149 ~ 40604033 (+) False XLOC_032229
TCONS_00062955 mRNA upstream 67303 40591214 ~ 40604033 (+) True XLOC_032229
TCONS_00062961 mRNA downstream 25769 40714811 ~ 40717048 (+) True XLOC_032234
TCONS_00062962 mRNA downstream 34512 40723554 ~ 40732692 (+) True XLOC_032235
TCONS_00062963 mRNA downstream 86758 40775800 ~ 40783641 (+) True XLOC_032236
TCONS_00062964 mRNA downstream 104973 40794015 ~ 40803800 (+) True XLOC_032237
TCONS_00062965 mRNA downstream 143593 40832635 ~ 40841032 (+) False XLOC_032238
TCONS_00062945 other upstream 124361 40545865 ~ 40546975 (+) False XLOC_032225
TCONS_00062936 other upstream 621891 40043615 ~ 40049445 (+) True XLOC_032217
TCONS_00062919 other upstream 1299461 39370620 ~ 39371875 (+) True XLOC_032204
TCONS_00062894 other upstream 1813034 38845676 ~ 38858302 (+) False XLOC_032191
TCONS_00062893 other upstream 1889178 38773418 ~ 38782158 (+) True XLOC_032190
TCONS_00062987 other downstream 505645 41194687 ~ 41194801 (+) True XLOC_032251
TCONS_00062995 other downstream 765749 41454791 ~ 41454873 (+) True XLOC_032256
TCONS_00062996 other downstream 774743 41463785 ~ 41493470 (+) False XLOC_032257
TCONS_00063008 other downstream 1164330 41853372 ~ 41869189 (+) True XLOC_032262
TCONS_00063013 other downstream 1308921 41997963 ~ 41998096 (+) True XLOC_032265

Expression Profile

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