RNA id: TCONS_00062966


Basic Information

Item Value
RNA id TCONS_00062966
length 867
lncRNA type retained_intron
GC content 0.42
exon number 4
gene id XLOC_032238
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40832635 ~ 40841032 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAATCTCCGTAAATCTAATCATTTGGTGTCTTTCAGGGAGGCCAGGATATACTTTCTATGATGGGTCAACTGATGAAACCCAAAAAGACAGAAATCACAGGTAACATGAATGAAGCTGGTTATCCTAACAGGATTTTGTATCGATCTGTGTTTAACTGtctttgtgtctctgtgtgtacGCAGATAAACTGCGAGGGGAGATCAATAAGGTTGTGAACAAGTACATTGATCAGGGTGTTGCAGAGCTGGTTCCAGGTGTTTTGTTTATTGATGAAGTTCACATGCTGGACATTGAGTGTTTCACCTACCTGCACCGAGCCCTGGAGAGCTCCATCGCCCCCATTGTAGTGTTTGCATCCAATCGAGGAAACTGCTTAATCAGGGGGACAGAGGACATCAGCTCTCCTCACGGAATTCCACTGGATCTACTGGACCGAGTCATGATTATCAGAACAATGCTGTACACTCCTCAAGAAATGAAACAGATCATAAAGATCCGAGCACAGACAGAAGGCCTCAACATCAGCGAAGAGGCATTATCTCACCTTGGAGAGATCGGTACCAAGACAACCCTCAGATATGCAGTGCAGCTGTTGACCCCTGCCAGTCTGTTGGCACGAGTTCAGGGGAGGGAAGTAGTCGAAAAAGAACACGTGGAAGAAATTAATGAACTCTTCTATGATGCCAAGTCTTCTGCAAAGATTCTACAAGATCAGCACACCAAGTTTATGAAATAACCTCAGCACTGATATCTGATATCTTTAGTTTTAAACCCCATTTTCTTGTCATTCTTAGGTAGAAAAAGTTCTGTTGtcattgttttttgtgtttggttttgaaaataaatctttttagATAGCAATGT

Function

GO:

id name namespace
GO:0006310 DNA recombination biological_process
GO:0003351 epithelial cilium movement involved in extracellular fluid movement biological_process
GO:0006338 chromatin remodeling biological_process
GO:0007507 heart development biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0070286 axonemal dynein complex assembly biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0060420 regulation of heart growth biological_process
GO:0016573 histone acetylation biological_process
GO:0000492 box C/D snoRNP assembly biological_process
GO:0006281 DNA repair biological_process
GO:0000812 Swr1 complex cellular_component
GO:0035267 NuA4 histone acetyltransferase complex cellular_component
GO:0071339 MLL1 complex cellular_component
GO:0031011 Ino80 complex cellular_component
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0097255 R2TP complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003678 DNA helicase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0043139 5'-3' DNA helicase activity molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
ko04310 Wnt signaling pathway
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-030109-2 Predicted to enable DNA helicase activity. Acts upstream of or within several processes, including axonemal dynein complex assembly; epithelial cilium movement involved in extracellular fluid movement; and regulation of heart growth. Located in cytosol. Is expressed in neural tube; neuromast; peripheral olfactory organ; and pronephric tubule. Orthologous to human RUVBL1 (RuvB like AAA ATPase 1).

Ensembl:

ensembl_id ENSDART00000142652

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062958 lncRNA upstream 173333 40662533 ~ 40664317 (+) True XLOC_032232
TCONS_00064919 lncRNA upstream 181604 40652905 ~ 40656046 (+) False XLOC_032231
TCONS_00064920 lncRNA upstream 183504 40652920 ~ 40654146 (+) True XLOC_032231
TCONS_00062951 lncRNA upstream 265546 40570779 ~ 40572104 (+) True XLOC_032227
TCONS_00062949 lncRNA upstream 271129 40564274 ~ 40566521 (+) False XLOC_032227
TCONS_00064921 lncRNA downstream 143696 40984597 ~ 40986135 (+) True XLOC_032242
TCONS_00064922 lncRNA downstream 239609 41080510 ~ 41082985 (+) True XLOC_032245
TCONS_00062980 lncRNA downstream 255272 41096173 ~ 41102304 (+) False XLOC_032246
TCONS_00063001 lncRNA downstream 664214 41505115 ~ 41505986 (+) True XLOC_032258
TCONS_00063004 lncRNA downstream 793168 41634069 ~ 41648856 (+) False XLOC_032259
TCONS_00062964 mRNA upstream 33850 40794015 ~ 40803800 (+) True XLOC_032237
TCONS_00062963 mRNA upstream 54009 40775800 ~ 40783641 (+) True XLOC_032236
TCONS_00062962 mRNA upstream 104958 40723554 ~ 40732692 (+) True XLOC_032235
TCONS_00062961 mRNA upstream 120602 40714811 ~ 40717048 (+) True XLOC_032234
TCONS_00062959 mRNA upstream 148608 40671336 ~ 40689042 (+) False XLOC_032233
TCONS_00062967 mRNA downstream 33305 40874206 ~ 40875253 (+) True XLOC_032239
TCONS_00062968 mRNA downstream 81671 40922572 ~ 40947671 (+) False XLOC_032240
TCONS_00062969 mRNA downstream 81771 40922672 ~ 40947638 (+) False XLOC_032240
TCONS_00062970 mRNA downstream 81771 40922672 ~ 40947671 (+) False XLOC_032240
TCONS_00062971 mRNA downstream 90117 40931018 ~ 40938487 (+) True XLOC_032240
TCONS_00062945 other upstream 290675 40545865 ~ 40546975 (+) False XLOC_032225
TCONS_00062936 other upstream 788205 40043615 ~ 40049445 (+) True XLOC_032217
TCONS_00062919 other upstream 1465775 39370620 ~ 39371875 (+) True XLOC_032204
TCONS_00062894 other upstream 1979348 38845676 ~ 38858302 (+) False XLOC_032191
TCONS_00062893 other upstream 2055492 38773418 ~ 38782158 (+) True XLOC_032190
TCONS_00062987 other downstream 353786 41194687 ~ 41194801 (+) True XLOC_032251
TCONS_00062995 other downstream 613890 41454791 ~ 41454873 (+) True XLOC_032256
TCONS_00062996 other downstream 622884 41463785 ~ 41493470 (+) False XLOC_032257
TCONS_00063008 other downstream 1012471 41853372 ~ 41869189 (+) True XLOC_032262
TCONS_00063013 other downstream 1157062 41997963 ~ 41998096 (+) True XLOC_032265

Expression Profile

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