RNA id: TCONS_00062970


Basic Information

Item Value
RNA id TCONS_00062970
length 3492
RNA type mRNA
GC content 0.48
exon number 16
gene id XLOC_032240
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40922572 ~ 40947671 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAATAAATCCTCGGCGTCGGCTTGATAAGTGTAGCCAGTTTGCTAATGAGATGCTCCTCTCTGTCAATTAACGATTCCACCTGGAGTGACAAGCGATATCTGAACCCCCTTCAACACCGTCGATAGagaaactttatttttatgcAGGAAACTTCATCCGCGTCCTTTCTGAATTCTGGACTGACTCCGGCATTTCTTGTAGTTTGGTATAAGACAGGTAGCCAGAAGCTAGCTAACTGAGGTAACCCGGCGGGGACAGAGAAGGTGCTGTGACACCGTTTCAAATATCAGGTGCCTAGAGCGTCTGGTATTTGGGCTTCTCTTCAGTTTGACCAGCCACCACAGTCATGGAGAAGGACGAAAATGGTGAAAACTTGGTGGACCCAATTAAGGACTCCGTAATGACCTCTGCCTATAGGTATACCAAGGAAGAGCTTATGGAAATCAAAGAATTGCCAATTTCAAATGAGAGGCCAGAATGTCTGTCAGAGAAATATGACagCGATGGCGTCTGGGATCCTGAAAAATGGCATGCTTCACTATATCCCTCTTCAGAGTCCAGTTGTCCTACAGAAGGTTACAAGAAAGACTATGTAGACGATAGGGTGCCACTTAAACGAAGAATTGCAGATCCCAGGGAACGTGTAAAAGATGATGATCTAGAGGTGGTTCTAAGTCCGCAACGTCGTAGTTTTGGTGGTGGCTGTCAAGTTGCACAAACCGCCCTCCCTCGCCGACCCACCAGCCCTCTGGAGAACAAAGAAAATGAGTCTCTCCGTTTGGGGGGAGCACGACGCATCGGCAGTGGCCGCATCATGGCATCACGCGTTTTTGAAAGGGATGCACGGGTTGACAAAGAGAGGGAGCGAGACCGAGAGCGTGACTTCAAGGATAAGCGATTTAGGAGAGATTTTGGAGACAAAAGAGTGTTCAGTGAGAGGAGAAGAAATGACTCGTATGCAGAAGAGGAGCCAGAGTGGTTCTCTGGTGGACCCACTAGTCAGTCTGAGACCATTGAGCTCATTGGCTTTGATGACAAAATCTTGGAGGATGACAAACGGAGGACCAAACGTTCCAAGAAGAGGCCAGAGTCCGTTAAAGAAGTTGAATGCAATGGTGGACTTTCAGACGGCCCTGAAGTAGTTCGGGAGTCAGGAGCTGATCAAGAGGTTCCACATGCTGAGCTTCCTGAGCAAACCCCTGGAGATTTTGACTTCAATGAGTTCTTCAATCTTGAAAAGACCATGCCTGGTCTGGCTTCGccACAGCAGCAGTCAGTGGATCCTGTTCTTGTGTCCTTGACTGAGGCACAGGTACCTGCACCTCAGCAAAAAAACATCTTTCAGGAGTTGTTGGTTACCCCCCATGGCCCTGTTCCTGTACCAGGCCTCATACACCACCGTGCTTCACCCCCACTTTTCCCACAGAGATCACAGATGCAGGACTTTTTCCCAGGCATGTCACCTGCAACCGGGTTCCATGGTGGTCCGCAAACAGTGTTGGATCAAATTCCAGACTTGCACCGGGCCAGGAATACACAACCGatgagagCTTTGCCAATGGGAGTGGACCAGACCAATCTTGAAGCTTTGTTTCAGCAGGATTTGGCAGTTCTTAATCGCCCACAGTACCAACAAGCCTACAACAAACAGGCTCATGATAAGATGTTTCGTAACAGGCCAACTCGGATGAACCGTTCACCTGTTCCTCACTTACCTGGCCGGACATCACCTGGCAGTACAGTTACAAGTGTCTTGTCTCCATCCTTCACTCCCACCTCTGTGATCAAAAAAATGTATGAGTCAAAAGAGAAAAGTCGGGATGATCTTGGGAGTAGACCAGGAAGCAAAGAGGAGACTGTGAACTCTCATAACTCACAGGACGATGGACCTCCATCTCCCAGTTCCTTCCTGGAAGACGTAGACACCAGTGGTCCTCAGACTGGTGGGGTAAAAGCCTGCTCCACCCCTGTTCCCACTCAAAACCGCCATATCAAAGACCCAGAGCGGCCCAGGCCACCATCGGTAACAGGCCCCCACACTCCCACCATGCTGTCCCCAGGGCCTTCGTCTCCTTTCCCCAGACCCCAGATGTATCCGGTCCCTCTGCTTCCTCACGTCCCCTTGGTCAGACCTCCACCCCAGCTTCACCCCGGTGTGATGCAAAGGATGCTGGCTCAGGGCATCCAGGCTCAACAGCTCGGACCCACATTAttacaaacagGCATGTTTCCTCAGGCTGTGGACCTGTCTCAGCTTCAGGGTTTGCCTCCAGCACTTTTAGGACAGCCTCTGTATCCACTTAGTCCTGCTGGACATCCGCTTATGGCCCCCAGAGCTGCAGGAACACACGTGCAGTTAGCAGTCATGCAACAACAGCTACAACAGCAGCAGAGACCCAATCTTCATGTGGCTCCCTCAGGAGGCCCCCAGTCCCAGAGCCACGGTCCCCATCGGACAAACCAGCGGAGAGGTGCAAGTCCCCCTCTGGGCCTGGCCAAGTGGTTTGGTTCAGACATGCTGCAGCAGCCTCTCCCTTCCATGCCTTCCACTAAAGTGATCAGTGTTGATGAGCTCGAGTTCCGCCAGTGATGACAATCCTCTGACCAATCAGCAGGAGTGAAGCAACACAAACCTTCCCTTCCCCATGATCCTCTAGTTGGAGATATGTGAACTTTTTGATTTCTACCATTGTGTACAGATGTCAGAGCCCCgtctatattttttttcttttcctgtgCTCTGTCGGAATCCCTTGCAGTTCTGTTTTGTTTATTCTTTAAGAAGGCCTGAAGTTGAGaaggaaaatgttttatttttcctgcCGCTGTCACGATGTAGGAtgttttgttcttctggagattTCAGATTTTGCAGTAAAGTAAATAATGTATAGGCCTGAATTGTACAGATTATGggaattgattttctttttccatCTTGTACAAAGaagtgactttttttctttttggttttcCTTCTGTGCTTGTGGGGAAGGTTCTCCTGCTGTTGGGGAACAGAAAACGTGCTCGCTCTTTGTCCAGTCACACAATGTCTGCACAATGTTTTCCATGTAAAGTTGATTATGAATGGGCGGCACTGCTAGTTTGTTGGAAAGGAGATGTTCCCATTTGTAGCAGTTTAATGCATCCCGGATCCAGAGATACAGGCCCTTGAAACTTTTGCTGGAATATTGAAGCCAGAATGTTCTCAAAGAGGGGACACTCTTCCAACCCAAGAAGCAAATGCTAGTTGTgcctttgtttccttttttttttttttcctttttctttttctttttttttttttttaaagagaaaaaccCTCCCATCCTCCTCTAGCCAGTCTTCTTAGTCACTGTATGAGAAGCACTGCTCTGAATCACATTTGTTTTAGGGTGGCAGGGGTTCGCAATTAAGTAATGTGCTATTAATTTAAGAAGCACAAatagttaataaatataaaaagctaaataaaaaaatcattcacaTAA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0017148 negative regulation of translation biological_process
GO:0032991 protein-containing complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005515 protein binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-050320-113 Predicted to enable mRNA binding activity. Predicted to be involved in negative regulation of translation. Predicted to act upstream of or within translational initiation. Part of protein-containing complex. Orthologous to human EIF4ENIF1 (eukaryotic translation initiation factor 4E nuclear import factor 1).

Ensembl:

ensembl_id ENSDART00000145153

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062966 lncRNA upstream 81771 40837650 ~ 40840901 (+) True XLOC_032238
TCONS_00062958 lncRNA upstream 258355 40662533 ~ 40664317 (+) True XLOC_032232
TCONS_00064919 lncRNA upstream 266626 40652905 ~ 40656046 (+) False XLOC_032231
TCONS_00064920 lncRNA upstream 268526 40652920 ~ 40654146 (+) True XLOC_032231
TCONS_00062951 lncRNA upstream 350568 40570779 ~ 40572104 (+) True XLOC_032227
TCONS_00064921 lncRNA downstream 36926 40984597 ~ 40986135 (+) True XLOC_032242
TCONS_00064922 lncRNA downstream 132839 41080510 ~ 41082985 (+) True XLOC_032245
TCONS_00062980 lncRNA downstream 148502 41096173 ~ 41102304 (+) False XLOC_032246
TCONS_00063001 lncRNA downstream 557444 41505115 ~ 41505986 (+) True XLOC_032258
TCONS_00063004 lncRNA downstream 686398 41634069 ~ 41648856 (+) False XLOC_032259
TCONS_00062967 mRNA upstream 47419 40874206 ~ 40875253 (+) True XLOC_032239
TCONS_00062965 mRNA upstream 81640 40832635 ~ 40841032 (+) False XLOC_032238
TCONS_00062964 mRNA upstream 118872 40794015 ~ 40803800 (+) True XLOC_032237
TCONS_00062963 mRNA upstream 139031 40775800 ~ 40783641 (+) True XLOC_032236
TCONS_00062962 mRNA upstream 189980 40723554 ~ 40732692 (+) True XLOC_032235
TCONS_00062972 mRNA downstream 3556 40951227 ~ 40968320 (+) False XLOC_032241
TCONS_00062973 mRNA downstream 4360 40952031 ~ 40964154 (+) True XLOC_032241
TCONS_00062974 mRNA downstream 44738 40992409 ~ 41009381 (+) False XLOC_032243
TCONS_00062975 mRNA downstream 45212 40992883 ~ 41003223 (+) True XLOC_032243
TCONS_00062976 mRNA downstream 91086 41038757 ~ 41057368 (+) False XLOC_032244
TCONS_00062945 other upstream 375697 40545865 ~ 40546975 (+) False XLOC_032225
TCONS_00062936 other upstream 873227 40043615 ~ 40049445 (+) True XLOC_032217
TCONS_00062919 other upstream 1550797 39370620 ~ 39371875 (+) True XLOC_032204
TCONS_00062894 other upstream 2064370 38845676 ~ 38858302 (+) False XLOC_032191
TCONS_00062893 other upstream 2140514 38773418 ~ 38782158 (+) True XLOC_032190
TCONS_00062987 other downstream 247016 41194687 ~ 41194801 (+) True XLOC_032251
TCONS_00062995 other downstream 507120 41454791 ~ 41454873 (+) True XLOC_032256
TCONS_00062996 other downstream 516114 41463785 ~ 41493470 (+) False XLOC_032257
TCONS_00063008 other downstream 905701 41853372 ~ 41869189 (+) True XLOC_032262
TCONS_00063013 other downstream 1050292 41997963 ~ 41998096 (+) True XLOC_032265

Expression Profile

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