Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00062971 |
| length | 633 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 4 |
| gene id | XLOC_032240 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007117.7 |
| NCBI id | CM002890.2 |
| chromosome length | 60270059 |
| location | 40922572 ~ 40947671 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006412 | translation | biological_process |
| GO:0006413 | translational initiation | biological_process |
| GO:0017148 | negative regulation of translation | biological_process |
| GO:0032991 | protein-containing complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005515 | protein binding | molecular_function |
| GO:0003729 | mRNA binding | molecular_function |
| GO:0003743 | translation initiation factor activity | molecular_function |
| id | description |
|---|---|
| ko03019 | Messenger RNA biogenesis |
| id | description |
|---|---|
| ZDB-GENE-050320-113 | Predicted to enable mRNA binding activity. Predicted to be involved in negative regulation of translation. Predicted to act upstream of or within translational initiation. Part of protein-containing complex. Orthologous to human EIF4ENIF1 (eukaryotic translation initiation factor 4E nuclear import factor 1). |
| ensembl_id | ENSDART00000188975 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00062966 | lncRNA | upstream | 90117 | 40837650 ~ 40840901 (+) | True | XLOC_032238 |
| TCONS_00062958 | lncRNA | upstream | 266701 | 40662533 ~ 40664317 (+) | True | XLOC_032232 |
| TCONS_00064919 | lncRNA | upstream | 274972 | 40652905 ~ 40656046 (+) | False | XLOC_032231 |
| TCONS_00064920 | lncRNA | upstream | 276872 | 40652920 ~ 40654146 (+) | True | XLOC_032231 |
| TCONS_00062951 | lncRNA | upstream | 358914 | 40570779 ~ 40572104 (+) | True | XLOC_032227 |
| TCONS_00064921 | lncRNA | downstream | 46110 | 40984597 ~ 40986135 (+) | True | XLOC_032242 |
| TCONS_00064922 | lncRNA | downstream | 142023 | 41080510 ~ 41082985 (+) | True | XLOC_032245 |
| TCONS_00062980 | lncRNA | downstream | 157686 | 41096173 ~ 41102304 (+) | False | XLOC_032246 |
| TCONS_00063001 | lncRNA | downstream | 566628 | 41505115 ~ 41505986 (+) | True | XLOC_032258 |
| TCONS_00063004 | lncRNA | downstream | 695582 | 41634069 ~ 41648856 (+) | False | XLOC_032259 |
| TCONS_00062967 | mRNA | upstream | 55765 | 40874206 ~ 40875253 (+) | True | XLOC_032239 |
| TCONS_00062965 | mRNA | upstream | 89986 | 40832635 ~ 40841032 (+) | False | XLOC_032238 |
| TCONS_00062964 | mRNA | upstream | 127218 | 40794015 ~ 40803800 (+) | True | XLOC_032237 |
| TCONS_00062963 | mRNA | upstream | 147377 | 40775800 ~ 40783641 (+) | True | XLOC_032236 |
| TCONS_00062962 | mRNA | upstream | 198326 | 40723554 ~ 40732692 (+) | True | XLOC_032235 |
| TCONS_00062972 | mRNA | downstream | 12740 | 40951227 ~ 40968320 (+) | False | XLOC_032241 |
| TCONS_00062973 | mRNA | downstream | 13544 | 40952031 ~ 40964154 (+) | True | XLOC_032241 |
| TCONS_00062974 | mRNA | downstream | 53922 | 40992409 ~ 41009381 (+) | False | XLOC_032243 |
| TCONS_00062975 | mRNA | downstream | 54396 | 40992883 ~ 41003223 (+) | True | XLOC_032243 |
| TCONS_00062976 | mRNA | downstream | 100270 | 41038757 ~ 41057368 (+) | False | XLOC_032244 |
| TCONS_00062945 | other | upstream | 384043 | 40545865 ~ 40546975 (+) | False | XLOC_032225 |
| TCONS_00062936 | other | upstream | 881573 | 40043615 ~ 40049445 (+) | True | XLOC_032217 |
| TCONS_00062919 | other | upstream | 1559143 | 39370620 ~ 39371875 (+) | True | XLOC_032204 |
| TCONS_00062894 | other | upstream | 2072716 | 38845676 ~ 38858302 (+) | False | XLOC_032191 |
| TCONS_00062893 | other | upstream | 2148860 | 38773418 ~ 38782158 (+) | True | XLOC_032190 |
| TCONS_00062987 | other | downstream | 256200 | 41194687 ~ 41194801 (+) | True | XLOC_032251 |
| TCONS_00062995 | other | downstream | 516304 | 41454791 ~ 41454873 (+) | True | XLOC_032256 |
| TCONS_00062996 | other | downstream | 525298 | 41463785 ~ 41493470 (+) | False | XLOC_032257 |
| TCONS_00063008 | other | downstream | 914885 | 41853372 ~ 41869189 (+) | True | XLOC_032262 |
| TCONS_00063013 | other | downstream | 1059476 | 41997963 ~ 41998096 (+) | True | XLOC_032265 |
