RNA id: TCONS_00064921


Basic Information

Item Value
RNA id TCONS_00064921
length 334
lncRNA type antisense_over
GC content 0.54
exon number 2
gene id XLOC_032242
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40984597 ~ 40986135 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCATTACCGCACAGCTGCATGGCACTGCTCAAGACGGCCACCGAGATCAGCTGCCAGCGGACGCTGCGGTCAGTCAACAGATCCCACGGCTGCTTGGCACGATCGCTTTTGATTTCATTCTGTTCCTGCAGAAGCTCATCCAGCTCTTCTCTCCGCACCTCACAGCCTCGCAGACGCTTCAGTGCTAtgaaagacAGGCCTCCTTGTCTTTACAGTCAAAAAGGAGGTAACGGGGACTCTCTGGGAACCAGGGCAAGGTGAGGAGCTGGATGAAGCCTGGGATGGCATTACTTGCCAATAAGTACTGCCAATATGGCTCACTACCCAACAACTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062966 lncRNA upstream 143696 40837650 ~ 40840901 (+) True XLOC_032238
TCONS_00062958 lncRNA upstream 320280 40662533 ~ 40664317 (+) True XLOC_032232
TCONS_00064919 lncRNA upstream 328551 40652905 ~ 40656046 (+) False XLOC_032231
TCONS_00064920 lncRNA upstream 330451 40652920 ~ 40654146 (+) True XLOC_032231
TCONS_00062951 lncRNA upstream 412493 40570779 ~ 40572104 (+) True XLOC_032227
TCONS_00064922 lncRNA downstream 94375 41080510 ~ 41082985 (+) True XLOC_032245
TCONS_00062980 lncRNA downstream 110038 41096173 ~ 41102304 (+) False XLOC_032246
TCONS_00063001 lncRNA downstream 518980 41505115 ~ 41505986 (+) True XLOC_032258
TCONS_00063004 lncRNA downstream 647934 41634069 ~ 41648856 (+) False XLOC_032259
TCONS_00063005 lncRNA downstream 648044 41634179 ~ 41670341 (+) False XLOC_032259
TCONS_00062972 mRNA upstream 16277 40951227 ~ 40968320 (+) False XLOC_032241
TCONS_00062973 mRNA upstream 20443 40952031 ~ 40964154 (+) True XLOC_032241
TCONS_00062968 mRNA upstream 36926 40922572 ~ 40947671 (+) False XLOC_032240
TCONS_00062970 mRNA upstream 36926 40922672 ~ 40947671 (+) False XLOC_032240
TCONS_00062969 mRNA upstream 36959 40922672 ~ 40947638 (+) False XLOC_032240
TCONS_00062974 mRNA downstream 6274 40992409 ~ 41009381 (+) False XLOC_032243
TCONS_00062975 mRNA downstream 6748 40992883 ~ 41003223 (+) True XLOC_032243
TCONS_00062976 mRNA downstream 52622 41038757 ~ 41057368 (+) False XLOC_032244
TCONS_00062977 mRNA downstream 53031 41039166 ~ 41048912 (+) False XLOC_032244
TCONS_00062978 mRNA downstream 53900 41040035 ~ 41060423 (+) True XLOC_032244
TCONS_00062945 other upstream 437622 40545865 ~ 40546975 (+) False XLOC_032225
TCONS_00062936 other upstream 935152 40043615 ~ 40049445 (+) True XLOC_032217
TCONS_00062919 other upstream 1612722 39370620 ~ 39371875 (+) True XLOC_032204
TCONS_00062894 other upstream 2126295 38845676 ~ 38858302 (+) False XLOC_032191
TCONS_00062893 other upstream 2202439 38773418 ~ 38782158 (+) True XLOC_032190
TCONS_00062987 other downstream 208552 41194687 ~ 41194801 (+) True XLOC_032251
TCONS_00062995 other downstream 468656 41454791 ~ 41454873 (+) True XLOC_032256
TCONS_00062996 other downstream 477650 41463785 ~ 41493470 (+) False XLOC_032257
TCONS_00063008 other downstream 867237 41853372 ~ 41869189 (+) True XLOC_032262
TCONS_00063013 other downstream 1011828 41997963 ~ 41998096 (+) True XLOC_032265