RNA id: TCONS_00062977


Basic Information

Item Value
RNA id TCONS_00062977
length 1387
RNA type mRNA
GC content 0.41
exon number 5
gene id XLOC_032244
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 41038757 ~ 41060423 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGGAGTAAAGGTGTGGAGGAATCAACATCCCATATACCTGGCTTCAATATACGGGATATACTTTGTTcataaagaaaggaaaaaagACTGCAGAAATGGTTCATATGAAGGCTATTTTGCTGGGTGCTGCAATGGCAGCCGTGGCTGTGACAACCATCATCGCTTTGATTCTGGCTCTTGCAAACCGGCAGACTTTGGATCAGCCATACTCAACACAGTTCGGGATTGTTTTTGATGCCGGCTCCAGCCACACTGCCCTTTTCCTGTACCAGTGGCAGggaaacaaagaaaacaacaCTGGAATCGTGTCGCAGAAACAGAGCTGCGATGTGGATGGTGATGGCATATCAAGCTATGTCCAGAACCCTGCAGGAGCGGGAGAAAGTCTGAAGAAATGCTTGGACATTGCTAAGGCAGCAATACCAACAGAACAGCAGAAGTCCACACCTGTGTACCTCGGTGCCACTGCTGGCATGCGGCTTCTAAACTTACAGAACCAAACTCAATCAGACAGCATCCTTGCAGAGGTCGCCAAAACAATTCAAACTTACCCATTTGATTTCCGAGGAGCCAGAATACTCACAGGGATGGAGGAGGGAGCTTATGGCTGGATCACCACCAACTACCTCTTGGAGAGCTTTATTAAGGTAAGGTGCACTTTACAATGCTGATAATAATAGGATGAtataataatatgctaatatatGGCTATTTTGCtagatactgtatatacagtacacgTCTATCATCAGAGGGATTGcttgttgttatatatatatataaggggttTTATACTTTTAAGTTTGACAGGACAGTAATGAGTgtagacaggaaagcatggggcaGATATAGGGGAAGAGACAGCGAGTTCAAAATTGAACTTGGTATGCAGCAAGCACCTTGATATTACTGGcacacattaatattatttagagaggggtctggatgtagACTGGGTGCAGTTGCAAGGTTAGATGCATGCAATGCTTTTCATGTGCACACCTAACCCCGCCCACAGAAATGGGCAAAAATAcctagaaatgtattaaaaaaatacaaaatatataaattttaaatgtatcaaaataaactactaaATACAGCAAccataaatgtatcaaaataaaatactgtattttatgaCTTCAAAATACTTCCATCAATAGACCTATTGGATCAATTCCTACACCATGAAGCTGACTTAGTAAAATACTCAATGATTGATCGAAACAACTTTTCTCTGCCACTTTGTTCCCCTGTAGGGTAAGTTGTGGCCTAATGGTTAATGAGTTGGACTTGTAATCCAAGGTAACTTGTGTTTCTTTTTGAGTTACAAATTACAATCCATCCAGTTCTTCTTTAACTGGAAGATTACTCTCCTAAAAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-142 Predicted to enable guanosine-diphosphatase activity and uridine-diphosphatase activity. Predicted to be involved in nucleoside diphosphate catabolic process. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in brain; heart; and liver. Orthologous to human ENTPD8 (ectonucleoside triphosphate diphosphohydrolase 8).

Ensembl:

ensembl_id ENSDART00000125659

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064921 lncRNA upstream 53031 40984597 ~ 40986135 (+) True XLOC_032242
TCONS_00062966 lncRNA upstream 198265 40837650 ~ 40840901 (+) True XLOC_032238
TCONS_00062958 lncRNA upstream 374849 40662533 ~ 40664317 (+) True XLOC_032232
TCONS_00064919 lncRNA upstream 383120 40652905 ~ 40656046 (+) False XLOC_032231
TCONS_00064922 lncRNA downstream 31598 41080510 ~ 41082985 (+) True XLOC_032245
TCONS_00062980 lncRNA downstream 47261 41096173 ~ 41102304 (+) False XLOC_032246
TCONS_00063001 lncRNA downstream 456203 41505115 ~ 41505986 (+) True XLOC_032258
TCONS_00063004 lncRNA downstream 585157 41634069 ~ 41648856 (+) False XLOC_032259
TCONS_00063005 lncRNA downstream 585267 41634179 ~ 41670341 (+) False XLOC_032259
TCONS_00062974 mRNA upstream 29785 40992409 ~ 41009381 (+) False XLOC_032243
TCONS_00062975 mRNA upstream 35943 40992883 ~ 41003223 (+) True XLOC_032243
TCONS_00062972 mRNA upstream 70846 40951227 ~ 40968320 (+) False XLOC_032241
TCONS_00062973 mRNA upstream 75012 40952031 ~ 40964154 (+) True XLOC_032241
TCONS_00062970 mRNA upstream 91495 40922672 ~ 40947671 (+) False XLOC_032240
TCONS_00062979 mRNA downstream 47146 41096058 ~ 41116053 (+) False XLOC_032246
TCONS_00062981 mRNA downstream 50875 41099787 ~ 41117242 (+) True XLOC_032246
TCONS_00062982 mRNA downstream 95243 41144155 ~ 41160544 (+) False XLOC_032247
TCONS_00062983 mRNA downstream 95291 41144203 ~ 41161017 (+) True XLOC_032247
TCONS_00062984 mRNA downstream 132957 41181869 ~ 41183823 (+) True XLOC_032248
TCONS_00062945 other upstream 492191 40545865 ~ 40546975 (+) False XLOC_032225
TCONS_00062936 other upstream 989721 40043615 ~ 40049445 (+) True XLOC_032217
TCONS_00062919 other upstream 1667291 39370620 ~ 39371875 (+) True XLOC_032204
TCONS_00062894 other upstream 2180864 38845676 ~ 38858302 (+) False XLOC_032191
TCONS_00062893 other upstream 2257008 38773418 ~ 38782158 (+) True XLOC_032190
TCONS_00062987 other downstream 145775 41194687 ~ 41194801 (+) True XLOC_032251
TCONS_00062995 other downstream 405879 41454791 ~ 41454873 (+) True XLOC_032256
TCONS_00062996 other downstream 414873 41463785 ~ 41493470 (+) False XLOC_032257
TCONS_00063008 other downstream 804460 41853372 ~ 41869189 (+) True XLOC_032262
TCONS_00063013 other downstream 949051 41997963 ~ 41998096 (+) True XLOC_032265

Expression Profile

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