RNA id: TCONS_00062980


Basic Information

Item Value
RNA id TCONS_00062980
length 917
lncRNA type retained_intron
GC content 0.40
exon number 3
gene id XLOC_032246
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 41096058 ~ 41117242 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGACTAAACAGAAGTTGTATACGGACGGATAAATGGTCAAACACATGAGAGGAAACAACAACCAAAGGAATATTTTGGGAACAAGGGCATGTATGAGTGGTGAGATGTCATCATTAGAGGATATCTTTTCCACGAACCAGTGCCCGACTGCTGTCTTTACCTCCCGAGGCACTGCTGTCACTCCAAACGGTGACAGTGGAGTATGCAAGATTGTGAAACAGCATGGTGTAGAGGGGGAAAGGCCGATGATCGGGGACAGGGTGTTCGTCCACTACACCGGCAGACTCCTCAGTGGAAAGAAGTTTGACTCCAGTCTAGACCGCAAGGAGCCTTTTGTTTTCAATGTGGGGAAAGGTAATAGATTCCATAGATTTATCTCTCATTTACCAATTTAAGATGTTATTACTGAAACCATTTTGCAAGAGAGACGTCCAGTGTGACGAATGCATAAGCAGACAAATGATTCTGTGTGCTATGTTGTTATACACATTTTTCTAATTCATTAATCATTATACGGCCAACTGTGTGGTGTGCCGTTATTTGGCTCAACTTGTGGACGTTGGTTTCACATATTTGGTTTTGATGGATTTGCAAAACCTTACTTTAATCTGCCAAATCAAATACCCGGTGTAGAAATAAATGGAACGGAAATGAGCATACCCTAATAAAATTAGACAGTCATCATGTTAACTCTCTTGTGGTTAAATGCTATCTGGCTAAATGGTATCTGGCAATACCACAGTAATGGCTTATTGAGTAAAGCAACATGCATCATATTTTTTTCTGCCTATTAACATCCTACGCAAAACTCCACTCTTCACCACATGTGAGAAACGCTGATAAATATCAACAGAAAAGAACATTAAACTAAAAAACTTAGAGTCAATATTTAGCCAGTGCAAAGCTTGCTTGGAACT

Function

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0061077 chaperone-mediated protein folding biological_process
GO:0005737 cytoplasm cellular_component
GO:0005528 FK506 binding molecular_function
GO:0031072 heat shock protein binding molecular_function
GO:0016853 isomerase activity molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-630 Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in chaperone-mediated protein folding and protein peptidyl-prolyl isomerization. Predicted to be active in cytoplasm. Is expressed in gut; head; and regenerating fin. Human ortholog(s) of this gene implicated in major depressive disorder. Orthologous to human FKBP5 (FKBP prolyl isomerase 5).

Ensembl:

ensembl_id ENSDART00000143741

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064922 lncRNA upstream 13188 41080510 ~ 41082985 (+) True XLOC_032245
TCONS_00064921 lncRNA upstream 110038 40984597 ~ 40986135 (+) True XLOC_032242
TCONS_00062966 lncRNA upstream 255272 40837650 ~ 40840901 (+) True XLOC_032238
TCONS_00062958 lncRNA upstream 431856 40662533 ~ 40664317 (+) True XLOC_032232
TCONS_00064919 lncRNA upstream 440127 40652905 ~ 40656046 (+) False XLOC_032231
TCONS_00063001 lncRNA downstream 402811 41505115 ~ 41505986 (+) True XLOC_032258
TCONS_00063004 lncRNA downstream 531765 41634069 ~ 41648856 (+) False XLOC_032259
TCONS_00063005 lncRNA downstream 531875 41634179 ~ 41670341 (+) False XLOC_032259
TCONS_00063006 lncRNA downstream 588790 41691094 ~ 41710148 (+) True XLOC_032259
TCONS_00064923 lncRNA downstream 663334 41765638 ~ 41773554 (+) False XLOC_032260
TCONS_00062978 mRNA upstream 35750 41040035 ~ 41060423 (+) True XLOC_032244
TCONS_00062976 mRNA upstream 38805 41038757 ~ 41057368 (+) False XLOC_032244
TCONS_00062977 mRNA upstream 47261 41039166 ~ 41048912 (+) False XLOC_032244
TCONS_00062974 mRNA upstream 86792 40992409 ~ 41009381 (+) False XLOC_032243
TCONS_00062982 mRNA downstream 41851 41144155 ~ 41160544 (+) False XLOC_032247
TCONS_00062983 mRNA downstream 41899 41144203 ~ 41161017 (+) True XLOC_032247
TCONS_00062984 mRNA downstream 79565 41181869 ~ 41183823 (+) True XLOC_032248
TCONS_00062985 mRNA downstream 84016 41186320 ~ 41189460 (+) True XLOC_032249
TCONS_00062986 mRNA downstream 89178 41191482 ~ 41193419 (+) True XLOC_032250
TCONS_00062945 other upstream 549198 40545865 ~ 40546975 (+) False XLOC_032225
TCONS_00062936 other upstream 1046728 40043615 ~ 40049445 (+) True XLOC_032217
TCONS_00062919 other upstream 1724298 39370620 ~ 39371875 (+) True XLOC_032204
TCONS_00062894 other upstream 2237871 38845676 ~ 38858302 (+) False XLOC_032191
TCONS_00062893 other upstream 2314015 38773418 ~ 38782158 (+) True XLOC_032190
TCONS_00062987 other downstream 92383 41194687 ~ 41194801 (+) True XLOC_032251
TCONS_00062995 other downstream 352487 41454791 ~ 41454873 (+) True XLOC_032256
TCONS_00062996 other downstream 361481 41463785 ~ 41493470 (+) False XLOC_032257
TCONS_00063008 other downstream 751068 41853372 ~ 41869189 (+) True XLOC_032262
TCONS_00063013 other downstream 895659 41997963 ~ 41998096 (+) True XLOC_032265

Expression Profile

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